Instructions to use AI4Protein/ProSST-NO_R2P with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use AI4Protein/ProSST-NO_R2P with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="AI4Protein/ProSST-NO_R2P", trust_remote_code=True)# pip install -U transformers accelerate # Load model directly from transformers import AutoModelForMaskedLM model = AutoModelForMaskedLM.from_pretrained("AI4Protein/ProSST-NO_R2P", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
Download configuration_prosst.py from AI4Protein/ProSST-NO_R2P: direct link, hf CLI and curl.
- Browser
- Download file 2.55 kB
-
https://huggingface.co/AI4Protein/ProSST-NO_R2P/resolve/main/configuration_prosst.py
- Command line
-
hf download hf://AI4Protein/ProSST-NO_R2P/configuration_prosst.py
-
curl -L -o configuration_prosst.py https://huggingface.co/AI4Protein/ProSST-NO_R2P/resolve/main/configuration_prosst.py
2.55 kB
| from transformers import PretrainedConfig | |
| class ProSSTConfig(PretrainedConfig): | |
| model_type = "ProSST" | |
| def __init__( | |
| self, | |
| token_dropout=True, | |
| mlm_probability=0.15, | |
| vocab_size=1024, | |
| type_vocab_size=0, | |
| ss_vocab_size=0, | |
| hidden_size=768, | |
| num_hidden_layers=12, | |
| num_attention_heads=12, | |
| intermediate_size=3072, | |
| hidden_act="gelu", | |
| hidden_dropout_prob=0.1, | |
| attention_probs_dropout_prob=0.1, | |
| mask_token_id=24, | |
| initializer_range=0.02, | |
| layer_norm_eps=1e-7, | |
| pad_token_id=0, | |
| position_biased_input=False, | |
| pooler_dropout=0, | |
| pooler_hidden_act="gelu", | |
| pos_att_type=None, | |
| position_embedding_type="relative", | |
| max_position_embeddings=1024, | |
| max_relative_positions=-1, | |
| relative_attention=False, | |
| pooling_head="mean", | |
| scale_hidden=1, | |
| **kwargs, | |
| ): | |
| super().__init__(**kwargs) | |
| self.token_dropout = token_dropout | |
| self.mlm_probability = mlm_probability | |
| self.hidden_size = hidden_size | |
| self.num_hidden_layers = num_hidden_layers | |
| self.num_attention_heads = num_attention_heads | |
| self.intermediate_size = intermediate_size | |
| self.hidden_act = hidden_act | |
| self.hidden_dropout_prob = hidden_dropout_prob | |
| self.attention_probs_dropout_prob = attention_probs_dropout_prob | |
| self.max_position_embeddings = max_position_embeddings | |
| self.type_vocab_size = type_vocab_size | |
| self.ss_vocab_size = ss_vocab_size | |
| self.initializer_range = initializer_range | |
| self.relative_attention = relative_attention | |
| self.max_relative_positions = max_relative_positions | |
| self.pad_token_id = pad_token_id | |
| self.position_biased_input = position_biased_input | |
| self.mask_token_id = mask_token_id | |
| self.position_embedding_type = position_embedding_type | |
| self.pooling_head = pooling_head | |
| self.scale_hidden = scale_hidden | |
| # Backwards compatibility | |
| if type(pos_att_type) == str: | |
| pos_att_type = [x.strip() for x in pos_att_type.lower().split("|")] | |
| self.pos_att_type = pos_att_type | |
| self.vocab_size = vocab_size | |
| self.layer_norm_eps = layer_norm_eps | |
| self.pooler_hidden_size = kwargs.get("pooler_hidden_size", hidden_size) | |
| self.pooler_dropout = pooler_dropout | |
| self.pooler_hidden_act = pooler_hidden_act | |
| ProSSTConfig.register_for_auto_class() |