id
int64 272k
38.6M
| published
stringdate 1977-03-03 00:00:00
2024-12-03 00:00:00
| title
stringlengths 22
204
| reference
stringlengths 38
40
| citations
int64 12.2k
89.2k
|
|---|---|---|---|---|
11,846,609
|
2001-12-03 00:00:00
|
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.
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https://pubmed.ncbi.nlm.nih.gov/11846609
| 89,231
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33,538,338
|
2021-05-03 00:00:00
|
Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.
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https://pubmed.ncbi.nlm.nih.gov/33538338
| 63,310
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25,516,281
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2014-12-03 00:00:00
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
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https://pubmed.ncbi.nlm.nih.gov/25516281
| 59,613
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30,207,593
|
2018-11-03 00:00:00
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Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
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https://pubmed.ncbi.nlm.nih.gov/30207593
| 43,137
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2,231,712
|
1990-10-05 00:00:00
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Basic local alignment search tool.
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https://pubmed.ncbi.nlm.nih.gov/2231712
| 41,839
|
19,505,943
|
2009-08-15 00:00:00
|
The Sequence Alignment/Map format and SAMtools.
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https://pubmed.ncbi.nlm.nih.gov/19505943
| 39,608
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22,743,772
|
2012-06-28 00:00:00
|
Fiji: an open-source platform for biological-image analysis.
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https://pubmed.ncbi.nlm.nih.gov/22743772
| 38,053
|
24,695,404
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2014-08-01 00:00:00
|
Trimmomatic: a flexible trimmer for Illumina sequence data.
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https://pubmed.ncbi.nlm.nih.gov/24695404
| 37,436
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16,199,517
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2005-10-25 00:00:00
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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
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https://pubmed.ncbi.nlm.nih.gov/16199517
| 37,326
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21,376,230
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2011-03-04 00:00:00
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Hallmarks of cancer: the next generation.
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https://pubmed.ncbi.nlm.nih.gov/21376230
| 36,248
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23,104,886
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2013-01-01 00:00:00
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STAR: ultrafast universal RNA-seq aligner.
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https://pubmed.ncbi.nlm.nih.gov/23104886
| 35,851
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22,388,286
|
2012-03-04 00:00:00
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Fast gapped-read alignment with Bowtie 2.
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https://pubmed.ncbi.nlm.nih.gov/22388286
| 35,156
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19,451,168
|
2009-07-15 00:00:00
|
Fast and accurate short read alignment with Burrows-Wheeler transform.
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https://pubmed.ncbi.nlm.nih.gov/19451168
| 32,244
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18,156,677
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2008-01-03 00:00:00
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A short history of SHELX.
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https://pubmed.ncbi.nlm.nih.gov/18156677
| 30,540
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9,254,694
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1997-09-01 00:00:00
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
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https://pubmed.ncbi.nlm.nih.gov/9254694
| 30,101
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14,597,658
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2003-11-03 00:00:00
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Cytoscape: a software environment for integrated models of biomolecular interaction networks.
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https://pubmed.ncbi.nlm.nih.gov/14597658
| 29,069
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9,310,563
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1997-09-13 00:00:00
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Bias in meta-analysis detected by a simple, graphical test.
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https://pubmed.ncbi.nlm.nih.gov/9310563
| 28,851
|
18,929,686
|
2009-04-03 00:00:00
|
Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.
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https://pubmed.ncbi.nlm.nih.gov/18929686
| 28,450
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22,930,834
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2012-07-03 00:00:00
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NIH Image to ImageJ: 25 years of image analysis.
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https://pubmed.ncbi.nlm.nih.gov/22930834
| 28,203
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19,910,308
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2010-01-01 00:00:00
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
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https://pubmed.ncbi.nlm.nih.gov/19910308
| 27,564
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15,264,254
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2004-10-03 00:00:00
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UCSF Chimera--a visualization system for exploratory research and analysis.
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https://pubmed.ncbi.nlm.nih.gov/15264254
| 26,477
|
25,605,792
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2015-04-20 00:00:00
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limma powers differential expression analyses for RNA-sequencing and microarray studies.
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https://pubmed.ncbi.nlm.nih.gov/25605792
| 26,023
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30,178,033
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2018-10-02 00:00:00
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PRISMA Extension for Scoping Reviews (PRISMA-ScR): Checklist and Explanation.
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https://pubmed.ncbi.nlm.nih.gov/30178033
| 25,083
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17,701,901
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2007-09-03 00:00:00
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PLINK: a tool set for whole-genome association and population-based linkage analyses.
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https://pubmed.ncbi.nlm.nih.gov/17701901
| 24,187
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31,986,264
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2020-02-15 00:00:00
|
Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
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https://pubmed.ncbi.nlm.nih.gov/31986264
| 23,913
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271,968
|
1977-12-03 00:00:00
|
DNA sequencing with chain-terminating inhibitors.
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https://pubmed.ncbi.nlm.nih.gov/271968
| 23,556
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19,131,956
|
2009-12-03 00:00:00
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
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https://pubmed.ncbi.nlm.nih.gov/19131956
| 23,417
|
34,265,844
|
2021-08-03 00:00:00
|
Highly accurate protein structure prediction with AlphaFold.
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https://pubmed.ncbi.nlm.nih.gov/34265844
| 23,275
|
23,329,690
|
2013-04-03 00:00:00
|
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
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https://pubmed.ncbi.nlm.nih.gov/23329690
| 22,980
|
10,592,173
|
2000-01-01 00:00:00
|
KEGG: kyoto encyclopedia of genes and genomes.
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https://pubmed.ncbi.nlm.nih.gov/10592173
| 22,823
|
15,572,765
|
2004-12-03 00:00:00
|
Coot: model-building tools for molecular graphics.
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https://pubmed.ncbi.nlm.nih.gov/15572765
| 22,722
|
3,558,716
|
1987-12-03 00:00:00
|
A new method of classifying prognostic comorbidity in longitudinal studies: development and validation.
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https://pubmed.ncbi.nlm.nih.gov/3558716
| 22,568
|
11,556,941
|
2001-09-03 00:00:00
|
The PHQ-9: validity of a brief depression severity measure.
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https://pubmed.ncbi.nlm.nih.gov/11556941
| 22,451
|
15,034,147
|
2004-12-03 00:00:00
|
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
|
https://pubmed.ncbi.nlm.nih.gov/15034147
| 22,410
|
22,455,463
|
2012-05-03 00:00:00
|
clusterProfiler: an R package for comparing biological themes among gene clusters.
|
https://pubmed.ncbi.nlm.nih.gov/22455463
| 22,130
|
843,571
|
1977-03-03 00:00:00
|
The measurement of observer agreement for categorical data.
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https://pubmed.ncbi.nlm.nih.gov/843571
| 21,940
|
17,695,343
|
2007-05-03 00:00:00
|
G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences.
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https://pubmed.ncbi.nlm.nih.gov/17695343
| 21,447
|
20,383,002
|
2010-04-03 00:00:00
|
Features and development of Coot.
|
https://pubmed.ncbi.nlm.nih.gov/20383002
| 21,032
|
3,802,833
|
1986-09-03 00:00:00
|
Meta-analysis in clinical trials.
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https://pubmed.ncbi.nlm.nih.gov/3802833
| 20,670
|
7,984,417
|
1994-11-11 00:00:00
|
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
|
https://pubmed.ncbi.nlm.nih.gov/7984417
| 20,559
|
8,744,570
|
1996-02-03 00:00:00
|
VMD: visual molecular dynamics.
|
https://pubmed.ncbi.nlm.nih.gov/8744570
| 20,064
|
17,872,937
|
2007-12-03 00:00:00
|
Consolidated criteria for reporting qualitative research (COREQ): a 32-item checklist for interviews and focus groups.
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https://pubmed.ncbi.nlm.nih.gov/17872937
| 19,325
|
20,110,278
|
2010-03-15 00:00:00
|
BEDTools: a flexible suite of utilities for comparing genomic features.
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https://pubmed.ncbi.nlm.nih.gov/20110278
| 19,010
|
12,111,919
|
2002-06-15 00:00:00
|
Quantifying heterogeneity in a meta-analysis.
|
https://pubmed.ncbi.nlm.nih.gov/12111919
| 18,903
|
14,744,438
|
2004-01-23 00:00:00
|
MicroRNAs: genomics, biogenesis, mechanism, and function.
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https://pubmed.ncbi.nlm.nih.gov/14744438
| 18,800
|
27,004,904
|
2016-07-03 00:00:00
|
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
|
https://pubmed.ncbi.nlm.nih.gov/27004904
| 18,220
|
25,741,868
|
2015-05-03 00:00:00
|
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
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https://pubmed.ncbi.nlm.nih.gov/25741868
| 18,095
|
20,644,199
|
2010-09-03 00:00:00
|
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
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https://pubmed.ncbi.nlm.nih.gov/20644199
| 17,611
|
24,227,677
|
2014-04-01 00:00:00
|
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
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https://pubmed.ncbi.nlm.nih.gov/24227677
| 17,580
|
20,124,702
|
2010-02-03 00:00:00
|
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
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https://pubmed.ncbi.nlm.nih.gov/20124702
| 17,363
|
6,880,820
|
1983-06-03 00:00:00
|
The hospital anxiety and depression scale.
|
https://pubmed.ncbi.nlm.nih.gov/6880820
| 17,208
|
3,447,015
|
1987-07-03 00:00:00
|
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
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https://pubmed.ncbi.nlm.nih.gov/3447015
| 17,135
|
21,296,855
|
2011-12-03 00:00:00
|
Global cancer statistics.
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https://pubmed.ncbi.nlm.nih.gov/21296855
| 16,612
|
11,328,886
|
2001-05-01 00:00:00
|
A new mathematical model for relative quantification in real-time RT-PCR.
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https://pubmed.ncbi.nlm.nih.gov/11328886
| 16,311
|
10,592,235
|
2000-01-01 00:00:00
|
The Protein Data Bank.
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https://pubmed.ncbi.nlm.nih.gov/10592235
| 16,256
|
29,722,887
|
2018-06-01 00:00:00
|
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
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https://pubmed.ncbi.nlm.nih.gov/29722887
| 16,248
|
19,097,774
|
2009-01-03 00:00:00
|
New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1).
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https://pubmed.ncbi.nlm.nih.gov/19097774
| 16,123
|
27,214,047
|
2016-07-03 00:00:00
|
DADA2: High-resolution sample inference from Illumina amplicon data.
|
https://pubmed.ncbi.nlm.nih.gov/27214047
| 15,840
|
16,717,171
|
2006-05-22 00:00:00
|
A brief measure for assessing generalized anxiety disorder: the GAD-7.
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https://pubmed.ncbi.nlm.nih.gov/16717171
| 15,755
|
22,506,599
|
2012-05-03 00:00:00
|
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
|
https://pubmed.ncbi.nlm.nih.gov/22506599
| 15,699
|
24,451,623
|
2014-05-01 00:00:00
|
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
|
https://pubmed.ncbi.nlm.nih.gov/24451623
| 15,694
|
19,114,008
|
2008-12-29 00:00:00
|
WGCNA: an R package for weighted correlation network analysis.
|
https://pubmed.ncbi.nlm.nih.gov/19114008
| 15,471
|
19,461,840
|
2007-08-01 00:00:00
|
Phaser crystallographic software.
|
https://pubmed.ncbi.nlm.nih.gov/19461840
| 15,460
|
2,748,771
|
1989-05-03 00:00:00
|
The Pittsburgh Sleep Quality Index: a new instrument for psychiatric practice and research.
|
https://pubmed.ncbi.nlm.nih.gov/2748771
| 15,419
|
25,651,787
|
2015-03-03 00:00:00
|
Global cancer statistics, 2012.
|
https://pubmed.ncbi.nlm.nih.gov/25651787
| 15,247
|
24,132,122
|
2013-12-03 00:00:00
|
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
|
https://pubmed.ncbi.nlm.nih.gov/24132122
| 15,174
|
23,193,283
|
2013-01-03 00:00:00
|
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
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https://pubmed.ncbi.nlm.nih.gov/23193283
| 14,996
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32,109,013
|
2020-04-30 00:00:00
|
Clinical Characteristics of Coronavirus Disease 2019 in China.
|
https://pubmed.ncbi.nlm.nih.gov/32109013
| 14,917
|
19,261,174
|
2009-12-03 00:00:00
|
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
|
https://pubmed.ncbi.nlm.nih.gov/19261174
| 14,891
|
32,171,076
|
2020-03-28 00:00:00
|
Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study.
|
https://pubmed.ncbi.nlm.nih.gov/32171076
| 14,675
|
25,260,700
|
2015-01-15 00:00:00
|
HTSeq--a Python framework to work with high-throughput sequencing data.
|
https://pubmed.ncbi.nlm.nih.gov/25260700
| 14,628
|
21,546,353
|
2011-10-03 00:00:00
|
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
|
https://pubmed.ncbi.nlm.nih.gov/21546353
| 14,493
|
2,440,339
|
1987-04-03 00:00:00
|
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
|
https://pubmed.ncbi.nlm.nih.gov/2440339
| 14,455
|
2,868,172
|
1986-02-08 00:00:00
|
Statistical methods for assessing agreement between two methods of clinical measurement.
|
https://pubmed.ncbi.nlm.nih.gov/2868172
| 14,422
|
30,423,086
|
2018-09-01 00:00:00
|
fastp: an ultra-fast all-in-one FASTQ preprocessor.
|
https://pubmed.ncbi.nlm.nih.gov/30423086
| 14,420
|
388,439
|
1979-09-03 00:00:00
|
Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.
|
https://pubmed.ncbi.nlm.nih.gov/388439
| 14,415
|
19,414,839
|
2009-05-05 00:00:00
|
A new equation to estimate glomerular filtration rate.
|
https://pubmed.ncbi.nlm.nih.gov/19414839
| 14,344
|
1,593,914
|
1992-06-03 00:00:00
|
The MOS 36-item short-form health survey (SF-36). I. Conceptual framework and item selection.
|
https://pubmed.ncbi.nlm.nih.gov/1593914
| 14,214
|
25,220,842
|
2015-03-01 00:00:00
|
Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012.
|
https://pubmed.ncbi.nlm.nih.gov/25220842
| 14,206
|
31,978,945
|
2020-02-20 00:00:00
|
A Novel Coronavirus from Patients with Pneumonia in China, 2019.
|
https://pubmed.ncbi.nlm.nih.gov/31978945
| 14,171
|
38,572,751
|
2024-12-03 00:00:00
|
Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
|
https://pubmed.ncbi.nlm.nih.gov/38572751
| 14,019
|
15,273,542
|
2004-08-03 00:00:00
|
Classification of surgical complications: a new proposal with evaluation in a cohort of 6336 patients and results of a survey.
|
https://pubmed.ncbi.nlm.nih.gov/15273542
| 13,883
|
18,546,601
|
2008-12-03 00:00:00
|
Analyzing real-time PCR data by the comparative C(T) method.
|
https://pubmed.ncbi.nlm.nih.gov/18546601
| 13,612
|
18,798,982
|
2008-12-03 00:00:00
|
Model-based analysis of ChIP-Seq (MACS).
|
https://pubmed.ncbi.nlm.nih.gov/18798982
| 13,575
|
17,846,036
|
2007-11-01 00:00:00
|
Clustal W and Clustal X version 2.0.
|
https://pubmed.ncbi.nlm.nih.gov/17846036
| 13,494
|
3,899,825
|
1985-07-03 00:00:00
|
Homeostasis model assessment: insulin resistance and beta-cell function from fasting plasma glucose and insulin concentrations in man.
|
https://pubmed.ncbi.nlm.nih.gov/3899825
| 13,254
|
31,078,660
|
2019-07-03 00:00:00
|
The REDCap consortium: Building an international community of software platform partners.
|
https://pubmed.ncbi.nlm.nih.gov/31078660
| 13,236
|
25,751,142
|
2015-04-03 00:00:00
|
HISAT: a fast spliced aligner with low memory requirements.
|
https://pubmed.ncbi.nlm.nih.gov/25751142
| 13,202
|
26,903,338
|
2016-02-23 00:00:00
|
The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3).
|
https://pubmed.ncbi.nlm.nih.gov/26903338
| 13,182
|
25,371,430
|
2015-01-03 00:00:00
|
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
|
https://pubmed.ncbi.nlm.nih.gov/25371430
| 13,153
|
25,554,246
|
2015-01-01 00:00:00
|
Preferred reporting items for systematic review and meta-analysis protocols (PRISMA-P) 2015 statement.
|
https://pubmed.ncbi.nlm.nih.gov/25554246
| 13,059
|
19,499,576
|
2010-01-30 00:00:00
|
AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.
|
https://pubmed.ncbi.nlm.nih.gov/19499576
| 12,971
|
16,904,174
|
2006-08-25 00:00:00
|
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.
|
https://pubmed.ncbi.nlm.nih.gov/16904174
| 12,963
|
27,919,275
|
2016-12-05 00:00:00
|
Rayyan-a web and mobile app for systematic reviews.
|
https://pubmed.ncbi.nlm.nih.gov/27919275
| 12,824
|
21,816,040
|
2011-08-04 00:00:00
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
|
https://pubmed.ncbi.nlm.nih.gov/21816040
| 12,684
|
6,606,682
|
1983-12-16 00:00:00
|
Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays.
|
https://pubmed.ncbi.nlm.nih.gov/6606682
| 12,630
|
16,204,405
|
2005-11-03 00:00:00
|
Three approaches to qualitative content analysis.
|
https://pubmed.ncbi.nlm.nih.gov/16204405
| 12,329
|
31,912,902
|
2020-01-03 00:00:00
|
Cancer statistics, 2020.
|
https://pubmed.ncbi.nlm.nih.gov/31912902
| 12,328
|
32,142,651
|
2020-04-16 00:00:00
|
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
|
https://pubmed.ncbi.nlm.nih.gov/32142651
| 12,261
|
15,817,019
|
2005-04-03 00:00:00
|
The Montreal Cognitive Assessment, MoCA: a brief screening tool for mild cognitive impairment.
|
https://pubmed.ncbi.nlm.nih.gov/15817019
| 12,245
|
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