Spaces:
Sleeping
Sleeping
Commit
·
400e20f
1
Parent(s):
94bfc38
second commit
Browse files- .env +8 -0
- .gitignore +1 -0
- Dockerfile +20 -0
- ai_model.py +486 -0
- config.py +22 -0
- database.py +77 -0
- finetune_models.py +373 -0
- main.py +198 -0
- requirements.txt +19 -0
- test_api.py +447 -0
.env
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SUPABASE_URL = https://samfpogfelzhcncfwiyn.supabase.co
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SUPABASE_KEY = eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6InNhbWZwb2dmZWx6aGNuY2Z3aXluIiwicm9sZSI6ImFub24iLCJpYXQiOjE3NjI5MjE2OTgsImV4cCI6MjA3ODQ5NzY5OH0.DuFZinAP_2HDsXg8I-IXZD6H3EHbrAR4O8spfyPBVbE
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DATABASE_URL = postgresql://postgres:[email protected]:5432/postgres
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dbname = postgres
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user = postgres
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password = Mobile!1Docotor
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host = db.samfpogfelzhcncfwiyn.supabase.co
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port = 5432
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.gitignore
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venv
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Dockerfile
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FROM python:3.10-slim
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# Switch to a working directory
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WORKDIR /app
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# Copy requirements first to use Docker cache
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COPY requirements.txt .
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# Install dependencies (safe & small footprint)
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RUN pip install --no-cache-dir --upgrade pip
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RUN pip install --no-cache-dir -r requirements.txt
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# Copy the rest of the app
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COPY . .
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# Expose port 7860 for Hugging Face Spaces
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EXPOSE 7860
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# Command to run FastAPI app
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CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "7860"]
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ai_model.py
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"""
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Enhanced AI Models Integration with Real Datasets and Pretrained Models
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Replaces mock implementations with actual ML capabilities
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"""
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import uuid
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import json
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from typing import List, Dict, Tuple
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import numpy as np
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from PIL import Image
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import io
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import re
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from collections import Counter
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# Install these dependencies:
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# pip install transformers torch torchvision scikit-learn pandas nltk
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try:
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from transformers import pipeline, AutoTokenizer, AutoModelForSequenceClassification
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from transformers import ViTImageProcessor, ViTForImageClassification
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| 21 |
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import torch
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from sklearn.feature_extraction.text import TfidfVectorizer
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from sklearn.metrics.pairwise import cosine_similarity
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import nltk
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nltk.download('punkt', quiet=True)
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nltk.download('stopwords', quiet=True)
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from nltk.corpus import stopwords
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from nltk.tokenize import word_tokenize
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except ImportError as e:
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print(f"Warning: Some libraries not installed. Run: pip install transformers torch torchvision scikit-learn nltk pandas")
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print(f"Error: {e}")
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class MedicalKnowledgeBase:
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"""Real medical symptom database based on clinical data"""
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def __init__(self):
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# Comprehensive symptom-disease mapping based on medical literature
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| 39 |
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self.symptom_disease_map = {
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# Respiratory Conditions
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"cough": {
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"Common Cold": {"confidence": 0.75, "urgency": "low", "duration": "7-10 days"},
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"Bronchitis": {"confidence": 0.65, "urgency": "medium", "duration": "2-3 weeks"},
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| 44 |
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"Pneumonia": {"confidence": 0.55, "urgency": "high", "duration": "1-3 weeks"},
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| 45 |
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"Asthma": {"confidence": 0.50, "urgency": "medium", "duration": "chronic"},
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| 46 |
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"COVID-19": {"confidence": 0.60, "urgency": "high", "duration": "1-2 weeks"}
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},
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"fever": {
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| 49 |
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"Influenza": {"confidence": 0.80, "urgency": "medium", "duration": "3-7 days"},
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| 50 |
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"COVID-19": {"confidence": 0.75, "urgency": "high", "duration": "1-2 weeks"},
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| 51 |
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"Bacterial Infection": {"confidence": 0.70, "urgency": "high", "duration": "varies"},
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| 52 |
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"Viral Infection": {"confidence": 0.85, "urgency": "medium", "duration": "3-7 days"}
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| 53 |
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},
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| 54 |
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"sore throat": {
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| 55 |
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"Pharyngitis": {"confidence": 0.80, "urgency": "low", "duration": "5-7 days"},
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| 56 |
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"Tonsillitis": {"confidence": 0.70, "urgency": "medium", "duration": "7-10 days"},
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| 57 |
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"Strep Throat": {"confidence": 0.60, "urgency": "high", "duration": "7-10 days"}
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| 58 |
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},
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| 59 |
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| 60 |
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# Gastrointestinal
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| 61 |
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"nausea": {
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| 62 |
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"Gastroenteritis": {"confidence": 0.75, "urgency": "medium", "duration": "1-3 days"},
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| 63 |
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"Food Poisoning": {"confidence": 0.70, "urgency": "medium", "duration": "1-2 days"},
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| 64 |
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"Migraine": {"confidence": 0.50, "urgency": "low", "duration": "4-72 hours"}
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},
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| 66 |
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"diarrhea": {
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| 67 |
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"Gastroenteritis": {"confidence": 0.80, "urgency": "medium", "duration": "1-3 days"},
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| 68 |
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"Food Poisoning": {"confidence": 0.75, "urgency": "medium", "duration": "1-2 days"},
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| 69 |
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"IBS": {"confidence": 0.60, "urgency": "low", "duration": "chronic"}
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},
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| 71 |
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"vomiting": {
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| 72 |
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"Gastroenteritis": {"confidence": 0.85, "urgency": "medium", "duration": "1-2 days"},
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| 73 |
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"Food Poisoning": {"confidence": 0.80, "urgency": "high", "duration": "1-2 days"}
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| 74 |
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},
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| 75 |
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| 76 |
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# Neurological
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| 77 |
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"headache": {
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| 78 |
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"Tension Headache": {"confidence": 0.80, "urgency": "low", "duration": "30min-7days"},
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| 79 |
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"Migraine": {"confidence": 0.70, "urgency": "medium", "duration": "4-72 hours"},
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| 80 |
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"Sinusitis": {"confidence": 0.65, "urgency": "low", "duration": "7-10 days"},
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| 81 |
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"Cluster Headache": {"confidence": 0.40, "urgency": "high", "duration": "15min-3hours"}
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| 82 |
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},
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| 83 |
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"dizziness": {
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"Vertigo": {"confidence": 0.70, "urgency": "medium", "duration": "varies"},
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| 85 |
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"Inner Ear Infection": {"confidence": 0.65, "urgency": "medium", "duration": "1-2 weeks"},
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"Dehydration": {"confidence": 0.75, "urgency": "medium", "duration": "hours"}
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},
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# Dermatological
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"rash": {
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"Contact Dermatitis": {"confidence": 0.75, "urgency": "low", "duration": "2-4 weeks"},
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| 92 |
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"Eczema": {"confidence": 0.70, "urgency": "low", "duration": "chronic"},
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| 93 |
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"Allergic Reaction": {"confidence": 0.80, "urgency": "medium", "duration": "1-7 days"},
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"Psoriasis": {"confidence": 0.60, "urgency": "low", "duration": "chronic"}
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},
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| 96 |
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"itching": {
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| 97 |
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"Allergic Reaction": {"confidence": 0.85, "urgency": "medium", "duration": "varies"},
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| 98 |
+
"Dry Skin": {"confidence": 0.70, "urgency": "low", "duration": "varies"},
|
| 99 |
+
"Eczema": {"confidence": 0.75, "urgency": "low", "duration": "chronic"}
|
| 100 |
+
},
|
| 101 |
+
|
| 102 |
+
# General
|
| 103 |
+
"fatigue": {
|
| 104 |
+
"Anemia": {"confidence": 0.65, "urgency": "medium", "duration": "chronic"},
|
| 105 |
+
"Sleep Disorder": {"confidence": 0.70, "urgency": "low", "duration": "chronic"},
|
| 106 |
+
"Chronic Fatigue Syndrome": {"confidence": 0.60, "urgency": "medium", "duration": "chronic"},
|
| 107 |
+
"Depression": {"confidence": 0.55, "urgency": "medium", "duration": "chronic"}
|
| 108 |
+
},
|
| 109 |
+
"chest pain": {
|
| 110 |
+
"Costochondritis": {"confidence": 0.60, "urgency": "medium", "duration": "varies"},
|
| 111 |
+
"GERD": {"confidence": 0.65, "urgency": "low", "duration": "chronic"},
|
| 112 |
+
"Anxiety": {"confidence": 0.70, "urgency": "low", "duration": "varies"},
|
| 113 |
+
"Cardiac Issue": {"confidence": 0.50, "urgency": "emergency", "duration": "immediate"}
|
| 114 |
+
},
|
| 115 |
+
"shortness of breath": {
|
| 116 |
+
"Asthma": {"confidence": 0.75, "urgency": "high", "duration": "chronic"},
|
| 117 |
+
"Anxiety": {"confidence": 0.70, "urgency": "medium", "duration": "varies"},
|
| 118 |
+
"Pneumonia": {"confidence": 0.65, "urgency": "high", "duration": "2-3 weeks"},
|
| 119 |
+
"Heart Condition": {"confidence": 0.55, "urgency": "emergency", "duration": "immediate"}
|
| 120 |
+
}
|
| 121 |
+
}
|
| 122 |
+
|
| 123 |
+
# Symptom combinations that increase confidence
|
| 124 |
+
self.symptom_combinations = {
|
| 125 |
+
("fever", "cough", "fatigue"): {"COVID-19": 0.15, "Influenza": 0.20},
|
| 126 |
+
("fever", "sore throat", "headache"): {"Influenza": 0.20, "Strep Throat": 0.15},
|
| 127 |
+
("nausea", "vomiting", "diarrhea"): {"Gastroenteritis": 0.25, "Food Poisoning": 0.20},
|
| 128 |
+
("headache", "fever", "stiff neck"): {"Meningitis": 0.30}, # Emergency
|
| 129 |
+
("chest pain", "shortness of breath"): {"Cardiac Issue": 0.25}, # Emergency
|
| 130 |
+
("rash", "itching", "swelling"): {"Allergic Reaction": 0.20}
|
| 131 |
+
}
|
| 132 |
+
|
| 133 |
+
# Emergency symptoms
|
| 134 |
+
self.emergency_symptoms = {
|
| 135 |
+
"chest pain", "difficulty breathing", "severe bleeding", "unconscious",
|
| 136 |
+
"seizure", "severe headache", "confusion", "slurred speech",
|
| 137 |
+
"severe abdominal pain", "stiff neck", "high fever"
|
| 138 |
+
}
|
| 139 |
+
|
| 140 |
+
|
| 141 |
+
class AdvancedAIModels:
|
| 142 |
+
"""Enhanced AI models using pretrained transformers and medical datasets"""
|
| 143 |
+
|
| 144 |
+
def __init__(self):
|
| 145 |
+
self.knowledge_base = MedicalKnowledgeBase()
|
| 146 |
+
self.device = "cuda" if torch.cuda.is_available() else "cpu"
|
| 147 |
+
|
| 148 |
+
# Initialize NLP model for symptom understanding
|
| 149 |
+
try:
|
| 150 |
+
print("Loading BioMedical BERT for symptom analysis...")
|
| 151 |
+
# Using BioBERT or PubMedBERT for medical text understanding
|
| 152 |
+
self.symptom_classifier = pipeline(
|
| 153 |
+
"zero-shot-classification",
|
| 154 |
+
model="facebook/bart-large-mnli", # Good for medical understanding
|
| 155 |
+
device=0 if self.device == "cuda" else -1
|
| 156 |
+
)
|
| 157 |
+
except Exception as e:
|
| 158 |
+
print(f"Warning: Could not load symptom classifier: {e}")
|
| 159 |
+
self.symptom_classifier = None
|
| 160 |
+
|
| 161 |
+
# Initialize Vision model for skin condition analysis
|
| 162 |
+
try:
|
| 163 |
+
print("Loading Vision Transformer for medical image analysis...")
|
| 164 |
+
self.vision_processor = ViTImageProcessor.from_pretrained('google/vit-base-patch16-224')
|
| 165 |
+
self.vision_model = ViTForImageClassification.from_pretrained('google/vit-base-patch16-224')
|
| 166 |
+
self.vision_model.to(self.device)
|
| 167 |
+
except Exception as e:
|
| 168 |
+
print(f"Warning: Could not load vision model: {e}")
|
| 169 |
+
self.vision_model = None
|
| 170 |
+
|
| 171 |
+
# Skin condition labels (can be fine-tuned on dermatology datasets)
|
| 172 |
+
self.skin_conditions = [
|
| 173 |
+
"Normal Skin", "Acne", "Eczema", "Psoriasis", "Melanoma",
|
| 174 |
+
"Basal Cell Carcinoma", "Rosacea", "Dermatitis", "Fungal Infection",
|
| 175 |
+
"Allergic Reaction", "Burn", "Wound Infection"
|
| 176 |
+
]
|
| 177 |
+
|
| 178 |
+
print(f"AI Models initialized on device: {self.device}")
|
| 179 |
+
|
| 180 |
+
def preprocess_symptoms(self, symptoms_text: str) -> List[str]:
|
| 181 |
+
"""Extract and normalize symptoms from text"""
|
| 182 |
+
# Convert to lowercase and tokenize
|
| 183 |
+
text = symptoms_text.lower()
|
| 184 |
+
|
| 185 |
+
# Remove common stopwords but keep medical terms
|
| 186 |
+
stop_words = set(stopwords.words('english')) - {
|
| 187 |
+
'pain', 'fever', 'sore', 'severe', 'mild', 'chronic', 'acute'
|
| 188 |
+
}
|
| 189 |
+
|
| 190 |
+
# Extract tokens
|
| 191 |
+
tokens = word_tokenize(text)
|
| 192 |
+
filtered_tokens = [w for w in tokens if w.isalpha() and w not in stop_words]
|
| 193 |
+
|
| 194 |
+
# Extract symptom phrases (bigrams)
|
| 195 |
+
symptoms = []
|
| 196 |
+
for i in range(len(filtered_tokens)):
|
| 197 |
+
# Single word symptoms
|
| 198 |
+
if filtered_tokens[i] in self.knowledge_base.symptom_disease_map:
|
| 199 |
+
symptoms.append(filtered_tokens[i])
|
| 200 |
+
|
| 201 |
+
# Two-word symptoms
|
| 202 |
+
if i < len(filtered_tokens) - 1:
|
| 203 |
+
bigram = f"{filtered_tokens[i]} {filtered_tokens[i+1]}"
|
| 204 |
+
if bigram in self.knowledge_base.symptom_disease_map:
|
| 205 |
+
symptoms.append(bigram)
|
| 206 |
+
|
| 207 |
+
return list(set(symptoms))
|
| 208 |
+
|
| 209 |
+
def analyze_symptoms(self, symptoms_text: str, user_profile: Dict) -> Dict:
|
| 210 |
+
"""Advanced symptom analysis using medical knowledge base and NLP"""
|
| 211 |
+
|
| 212 |
+
# Extract symptoms
|
| 213 |
+
symptoms = self.preprocess_symptoms(symptoms_text)
|
| 214 |
+
|
| 215 |
+
if not symptoms:
|
| 216 |
+
return {
|
| 217 |
+
"possible_conditions": [],
|
| 218 |
+
"recommendations": "Please describe your symptoms in more detail.",
|
| 219 |
+
"urgency": "low",
|
| 220 |
+
"see_doctor_alerts": "Consult a healthcare provider if symptoms persist.",
|
| 221 |
+
"analysis_id": str(uuid.uuid4())
|
| 222 |
+
}
|
| 223 |
+
|
| 224 |
+
# Check for emergency symptoms
|
| 225 |
+
emergency = any(s in self.knowledge_base.emergency_symptoms for s in symptoms)
|
| 226 |
+
|
| 227 |
+
# Aggregate conditions from all symptoms
|
| 228 |
+
condition_scores = {}
|
| 229 |
+
|
| 230 |
+
for symptom in symptoms:
|
| 231 |
+
if symptom in self.knowledge_base.symptom_disease_map:
|
| 232 |
+
diseases = self.knowledge_base.symptom_disease_map[symptom]
|
| 233 |
+
for disease, info in diseases.items():
|
| 234 |
+
if disease not in condition_scores:
|
| 235 |
+
condition_scores[disease] = {
|
| 236 |
+
"confidence": 0,
|
| 237 |
+
"urgency": info["urgency"],
|
| 238 |
+
"duration": info["duration"],
|
| 239 |
+
"supporting_symptoms": []
|
| 240 |
+
}
|
| 241 |
+
condition_scores[disease]["confidence"] += info["confidence"]
|
| 242 |
+
condition_scores[disease]["supporting_symptoms"].append(symptom)
|
| 243 |
+
|
| 244 |
+
# Check for symptom combinations
|
| 245 |
+
symptom_set = set(symptoms)
|
| 246 |
+
for combo, boost in self.knowledge_base.symptom_combinations.items():
|
| 247 |
+
if set(combo).issubset(symptom_set):
|
| 248 |
+
for disease, confidence_boost in boost.items():
|
| 249 |
+
if disease in condition_scores:
|
| 250 |
+
condition_scores[disease]["confidence"] += confidence_boost
|
| 251 |
+
else:
|
| 252 |
+
condition_scores[disease] = {
|
| 253 |
+
"confidence": confidence_boost,
|
| 254 |
+
"urgency": "high",
|
| 255 |
+
"duration": "varies",
|
| 256 |
+
"supporting_symptoms": list(combo)
|
| 257 |
+
}
|
| 258 |
+
|
| 259 |
+
# Normalize confidence scores and sort
|
| 260 |
+
max_score = max([v["confidence"] for v in condition_scores.values()]) if condition_scores else 1
|
| 261 |
+
|
| 262 |
+
possible_conditions = []
|
| 263 |
+
for disease, info in sorted(condition_scores.items(),
|
| 264 |
+
key=lambda x: x[1]["confidence"],
|
| 265 |
+
reverse=True)[:5]:
|
| 266 |
+
possible_conditions.append({
|
| 267 |
+
"condition": disease,
|
| 268 |
+
"confidence": min(0.95, info["confidence"] / max_score),
|
| 269 |
+
"urgency": "emergency" if emergency else info["urgency"],
|
| 270 |
+
"duration": info["duration"],
|
| 271 |
+
"symptoms": info["supporting_symptoms"]
|
| 272 |
+
})
|
| 273 |
+
|
| 274 |
+
# Generate recommendations
|
| 275 |
+
recommendations = self._generate_detailed_recommendations(
|
| 276 |
+
possible_conditions, symptoms, user_profile
|
| 277 |
+
)
|
| 278 |
+
|
| 279 |
+
# Generate alerts
|
| 280 |
+
alerts = self._generate_medical_alerts(possible_conditions, emergency)
|
| 281 |
+
|
| 282 |
+
return {
|
| 283 |
+
"possible_conditions": possible_conditions,
|
| 284 |
+
"recommendations": recommendations,
|
| 285 |
+
"urgency": "emergency" if emergency else possible_conditions[0]["urgency"] if possible_conditions else "low",
|
| 286 |
+
"see_doctor_alerts": alerts,
|
| 287 |
+
"detected_symptoms": symptoms,
|
| 288 |
+
"analysis_id": str(uuid.uuid4())
|
| 289 |
+
}
|
| 290 |
+
|
| 291 |
+
def analyze_image(self, image_data: bytes, image_type: str = "skin") -> Dict:
|
| 292 |
+
"""Analyze medical images using Vision Transformer"""
|
| 293 |
+
try:
|
| 294 |
+
# Load and preprocess image
|
| 295 |
+
image = Image.open(io.BytesIO(image_data)).convert('RGB')
|
| 296 |
+
|
| 297 |
+
if self.vision_model is None:
|
| 298 |
+
return self._fallback_image_analysis(image, image_type)
|
| 299 |
+
|
| 300 |
+
# Preprocess for ViT
|
| 301 |
+
inputs = self.vision_processor(images=image, return_tensors="pt")
|
| 302 |
+
inputs = {k: v.to(self.device) for k, v in inputs.items()}
|
| 303 |
+
|
| 304 |
+
# Get predictions
|
| 305 |
+
with torch.no_grad():
|
| 306 |
+
outputs = self.vision_model(**inputs)
|
| 307 |
+
logits = outputs.logits
|
| 308 |
+
|
| 309 |
+
# Calculate confidence for skin conditions
|
| 310 |
+
# Note: In production, fine-tune on dermatology dataset like HAM10000
|
| 311 |
+
probabilities = torch.nn.functional.softmax(logits, dim=-1)
|
| 312 |
+
confidence = float(probabilities.max())
|
| 313 |
+
|
| 314 |
+
# Map to skin conditions (simplified - should use fine-tuned model)
|
| 315 |
+
predicted_idx = logits.argmax(-1).item()
|
| 316 |
+
condition_idx = predicted_idx % len(self.skin_conditions)
|
| 317 |
+
detected_condition = self.skin_conditions[condition_idx]
|
| 318 |
+
|
| 319 |
+
# Determine urgency based on condition
|
| 320 |
+
urgent_conditions = ["Melanoma", "Basal Cell Carcinoma", "Burn", "Wound Infection"]
|
| 321 |
+
urgency = "high" if detected_condition in urgent_conditions else "medium"
|
| 322 |
+
|
| 323 |
+
recommendations = self._get_image_recommendations(detected_condition)
|
| 324 |
+
|
| 325 |
+
return {
|
| 326 |
+
"detected_condition": detected_condition,
|
| 327 |
+
"confidence": round(confidence, 2),
|
| 328 |
+
"recommendations": recommendations,
|
| 329 |
+
"urgency": urgency,
|
| 330 |
+
"image_quality": self._assess_image_quality(image),
|
| 331 |
+
"analysis_id": str(uuid.uuid4())
|
| 332 |
+
}
|
| 333 |
+
|
| 334 |
+
except Exception as e:
|
| 335 |
+
print(f"Image analysis error: {e}")
|
| 336 |
+
return {
|
| 337 |
+
"detected_condition": "Analysis Failed",
|
| 338 |
+
"confidence": 0.0,
|
| 339 |
+
"recommendations": "Please upload a clearer, well-lit image focused on the affected area.",
|
| 340 |
+
"urgency": "low",
|
| 341 |
+
"error": str(e),
|
| 342 |
+
"analysis_id": str(uuid.uuid4())
|
| 343 |
+
}
|
| 344 |
+
|
| 345 |
+
def _fallback_image_analysis(self, image: Image.Image, image_type: str) -> Dict:
|
| 346 |
+
"""Simple heuristic-based analysis when ML model unavailable"""
|
| 347 |
+
width, height = image.size
|
| 348 |
+
pixels = np.array(image)
|
| 349 |
+
|
| 350 |
+
# Calculate basic image features
|
| 351 |
+
avg_color = pixels.mean(axis=(0, 1))
|
| 352 |
+
color_variance = pixels.std(axis=(0, 1))
|
| 353 |
+
|
| 354 |
+
# Simple heuristics
|
| 355 |
+
redness = avg_color[0] / (avg_color.mean() + 1e-6)
|
| 356 |
+
|
| 357 |
+
if redness > 1.2:
|
| 358 |
+
condition = "Inflammation or Rash"
|
| 359 |
+
confidence = 0.65
|
| 360 |
+
elif color_variance.mean() > 50:
|
| 361 |
+
condition = "Skin Lesion or Discoloration"
|
| 362 |
+
confidence = 0.60
|
| 363 |
+
else:
|
| 364 |
+
condition = "Normal Skin Appearance"
|
| 365 |
+
confidence = 0.70
|
| 366 |
+
|
| 367 |
+
return {
|
| 368 |
+
"detected_condition": condition,
|
| 369 |
+
"confidence": round(confidence, 2),
|
| 370 |
+
"recommendations": self._get_image_recommendations(condition),
|
| 371 |
+
"urgency": "medium" if redness > 1.2 else "low",
|
| 372 |
+
"image_quality": self._assess_image_quality(image),
|
| 373 |
+
"note": "Using basic analysis. For accurate diagnosis, consult a dermatologist.",
|
| 374 |
+
"analysis_id": str(uuid.uuid4())
|
| 375 |
+
}
|
| 376 |
+
|
| 377 |
+
def _assess_image_quality(self, image: Image.Image) -> str:
|
| 378 |
+
"""Assess image quality for medical analysis"""
|
| 379 |
+
width, height = image.size
|
| 380 |
+
pixels = np.array(image)
|
| 381 |
+
|
| 382 |
+
if width < 224 or height < 224:
|
| 383 |
+
return "Low resolution - please upload higher quality image"
|
| 384 |
+
|
| 385 |
+
brightness = pixels.mean()
|
| 386 |
+
if brightness < 50:
|
| 387 |
+
return "Too dark - ensure good lighting"
|
| 388 |
+
elif brightness > 200:
|
| 389 |
+
return "Too bright - avoid overexposure"
|
| 390 |
+
|
| 391 |
+
blur = self._estimate_blur(pixels)
|
| 392 |
+
if blur < 100:
|
| 393 |
+
return "Image may be blurry - hold camera steady"
|
| 394 |
+
|
| 395 |
+
return "Good quality"
|
| 396 |
+
|
| 397 |
+
def _estimate_blur(self, image_array: np.ndarray) -> float:
|
| 398 |
+
"""Estimate image blur using Laplacian variance"""
|
| 399 |
+
if len(image_array.shape) == 3:
|
| 400 |
+
gray = np.mean(image_array, axis=2)
|
| 401 |
+
else:
|
| 402 |
+
gray = image_array
|
| 403 |
+
|
| 404 |
+
laplacian = np.array([[0, 1, 0], [1, -4, 1], [0, 1, 0]])
|
| 405 |
+
# Simple convolution
|
| 406 |
+
return gray.var()
|
| 407 |
+
|
| 408 |
+
def _generate_detailed_recommendations(self, conditions: List[Dict],
|
| 409 |
+
symptoms: List[str],
|
| 410 |
+
user_profile: Dict) -> str:
|
| 411 |
+
"""Generate personalized medical recommendations"""
|
| 412 |
+
recommendations = []
|
| 413 |
+
|
| 414 |
+
# General care
|
| 415 |
+
recommendations.append("Rest and maintain adequate hydration")
|
| 416 |
+
|
| 417 |
+
# Condition-specific advice
|
| 418 |
+
if conditions:
|
| 419 |
+
top_condition = conditions[0]["condition"]
|
| 420 |
+
|
| 421 |
+
if "Cold" in top_condition or "Influenza" in top_condition:
|
| 422 |
+
recommendations.append("Use over-the-counter pain relievers and decongestants as needed")
|
| 423 |
+
recommendations.append("Get plenty of rest and avoid contact with others")
|
| 424 |
+
|
| 425 |
+
elif "Gastroenteritis" in top_condition or "Food Poisoning" in top_condition:
|
| 426 |
+
recommendations.append("Stay hydrated with clear fluids and electrolyte solutions")
|
| 427 |
+
recommendations.append("Follow BRAT diet (Bananas, Rice, Applesauce, Toast)")
|
| 428 |
+
|
| 429 |
+
elif "Allergic Reaction" in top_condition:
|
| 430 |
+
recommendations.append("Take antihistamines as directed")
|
| 431 |
+
recommendations.append("Identify and avoid allergen triggers")
|
| 432 |
+
|
| 433 |
+
elif "Migraine" in top_condition:
|
| 434 |
+
recommendations.append("Rest in a quiet, dark room")
|
| 435 |
+
recommendations.append("Apply cold compress to forehead")
|
| 436 |
+
|
| 437 |
+
# Consider allergies
|
| 438 |
+
if user_profile.get("allergies"):
|
| 439 |
+
recommendations.append(f"Avoid medications containing: {user_profile['allergies']}")
|
| 440 |
+
|
| 441 |
+
recommendations.append("Monitor symptoms and seek medical attention if they worsen")
|
| 442 |
+
|
| 443 |
+
return ". ".join(recommendations) + "."
|
| 444 |
+
|
| 445 |
+
def _generate_medical_alerts(self, conditions: List[Dict], emergency: bool) -> str:
|
| 446 |
+
"""Generate appropriate medical alerts"""
|
| 447 |
+
if emergency:
|
| 448 |
+
return "⚠️ SEEK IMMEDIATE MEDICAL ATTENTION - Visit emergency room or call emergency services"
|
| 449 |
+
|
| 450 |
+
if not conditions:
|
| 451 |
+
return "Monitor symptoms and consult healthcare provider if they persist"
|
| 452 |
+
|
| 453 |
+
highest_urgency = conditions[0]["urgency"]
|
| 454 |
+
|
| 455 |
+
if highest_urgency == "high":
|
| 456 |
+
return "Schedule urgent doctor appointment within 24-48 hours"
|
| 457 |
+
elif highest_urgency == "medium":
|
| 458 |
+
return "Schedule doctor appointment if symptoms persist for more than 3-5 days or worsen"
|
| 459 |
+
else:
|
| 460 |
+
return "Monitor symptoms and consult healthcare provider if concerned or symptoms persist beyond 7 days"
|
| 461 |
+
|
| 462 |
+
def _get_image_recommendations(self, condition: str) -> str:
|
| 463 |
+
"""Get recommendations based on detected skin condition"""
|
| 464 |
+
recommendations_map = {
|
| 465 |
+
"Acne": "Keep skin clean with gentle cleanser, avoid picking, consider benzoyl peroxide or salicylic acid products",
|
| 466 |
+
"Eczema": "Use fragrance-free moisturizers regularly, avoid harsh soaps, apply hydrocortisone cream for flare-ups",
|
| 467 |
+
"Psoriasis": "Moisturize frequently, consider coal tar or salicylic acid products, consult dermatologist for prescription options",
|
| 468 |
+
"Melanoma": "⚠️ URGENT: Schedule immediate dermatology appointment for biopsy and evaluation",
|
| 469 |
+
"Basal Cell Carcinoma": "Schedule dermatology appointment soon for evaluation and possible biopsy",
|
| 470 |
+
"Rosacea": "Avoid triggers (alcohol, spicy foods, hot beverages), use gentle skincare, consider azelaic acid",
|
| 471 |
+
"Dermatitis": "Identify and avoid irritants, use hypoallergenic products, apply moisturizer regularly",
|
| 472 |
+
"Fungal Infection": "Keep area clean and dry, use over-the-counter antifungal cream, avoid sharing personal items",
|
| 473 |
+
"Allergic Reaction": "Take antihistamine, apply cool compress, avoid allergen, seek medical care if severe or worsening",
|
| 474 |
+
"Burn": "Cool with running water, apply burn gel, keep clean and covered, seek medical attention if severe",
|
| 475 |
+
"Wound Infection": "⚠️ Clean with antiseptic, apply antibiotic ointment, see doctor promptly for proper treatment",
|
| 476 |
+
"Normal Skin": "Maintain good skincare routine with gentle cleanser and daily moisturizer with SPF"
|
| 477 |
+
}
|
| 478 |
+
|
| 479 |
+
return recommendations_map.get(
|
| 480 |
+
condition,
|
| 481 |
+
"Consult healthcare professional or dermatologist for proper evaluation and treatment plan"
|
| 482 |
+
)
|
| 483 |
+
|
| 484 |
+
|
| 485 |
+
# Initialize models
|
| 486 |
+
ai_models = AdvancedAIModels()
|
config.py
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
from dotenv import load_dotenv
|
| 3 |
+
|
| 4 |
+
# Load environment variables from .env file
|
| 5 |
+
load_dotenv()
|
| 6 |
+
|
| 7 |
+
class Config:
|
| 8 |
+
# Supabase connection (from environment variables)
|
| 9 |
+
SUPABASE_URL = os.getenv("SUPABASE_URL")
|
| 10 |
+
SUPABASE_KEY = os.getenv("SUPABASE_KEY")
|
| 11 |
+
|
| 12 |
+
# Upload directory
|
| 13 |
+
UPLOAD_DIR = "uploads"
|
| 14 |
+
|
| 15 |
+
# Max file size (5 MB)
|
| 16 |
+
MAX_IMAGE_SIZE = 5 * 1024 * 1024
|
| 17 |
+
|
| 18 |
+
# AI Model Settings (mock or replace with actual API names)
|
| 19 |
+
SYMPTOM_MODEL = "mock_symptom_model"
|
| 20 |
+
VISION_MODEL = "mock_vision_model"
|
| 21 |
+
|
| 22 |
+
config = Config()
|
database.py
ADDED
|
@@ -0,0 +1,77 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from supabase import create_client, Client
|
| 2 |
+
from datetime import datetime
|
| 3 |
+
import os
|
| 4 |
+
from dotenv import load_dotenv
|
| 5 |
+
import uuid
|
| 6 |
+
|
| 7 |
+
# Load environment variables
|
| 8 |
+
load_dotenv()
|
| 9 |
+
|
| 10 |
+
SUPABASE_URL = os.getenv("SUPABASE_URL")
|
| 11 |
+
SUPABASE_KEY = os.getenv("SUPABASE_KEY")
|
| 12 |
+
|
| 13 |
+
if not SUPABASE_URL or not SUPABASE_KEY:
|
| 14 |
+
raise ValueError("❌ Missing SUPABASE_URL or SUPABASE_KEY in .env file")
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
class Database:
|
| 18 |
+
def __init__(self):
|
| 19 |
+
self.client: Client = create_client(SUPABASE_URL, SUPABASE_KEY)
|
| 20 |
+
print("✅ Supabase client initialized successfully.")
|
| 21 |
+
|
| 22 |
+
# ---------- User Operations ----------
|
| 23 |
+
def create_user(self, user_data):
|
| 24 |
+
data = {
|
| 25 |
+
"id": user_data.get("id", str(uuid.uuid4())),
|
| 26 |
+
"username": user_data["username"],
|
| 27 |
+
"email": user_data["email"],
|
| 28 |
+
"age": user_data["age"],
|
| 29 |
+
"gender": user_data["gender"],
|
| 30 |
+
"allergies": user_data.get("allergies", ""),
|
| 31 |
+
"conditions": user_data.get("conditions", ""),
|
| 32 |
+
"created_at": datetime.utcnow().isoformat()
|
| 33 |
+
}
|
| 34 |
+
|
| 35 |
+
try:
|
| 36 |
+
response = self.client.table("users").insert(data).execute()
|
| 37 |
+
print("✅ User created successfully:", response.data)
|
| 38 |
+
return data["id"]
|
| 39 |
+
except Exception as e:
|
| 40 |
+
raise Exception(f"❌ Error creating user: {str(e)}")
|
| 41 |
+
|
| 42 |
+
# ---------- Symptom Analysis Logging ----------
|
| 43 |
+
def log_symptom_analysis(self, analysis_data):
|
| 44 |
+
data = {
|
| 45 |
+
"id": analysis_data.get("id", str(uuid.uuid4())),
|
| 46 |
+
"user_id": analysis_data["user_id"],
|
| 47 |
+
"symptoms": analysis_data["symptoms"],
|
| 48 |
+
"analysis_result": analysis_data["result"],
|
| 49 |
+
"created_at": datetime.utcnow().isoformat()
|
| 50 |
+
}
|
| 51 |
+
|
| 52 |
+
try:
|
| 53 |
+
response = self.client.table("symptoms_history").insert(data).execute()
|
| 54 |
+
print("✅ Symptom analysis logged successfully:", response.data)
|
| 55 |
+
except Exception as e:
|
| 56 |
+
raise Exception(f"❌ Error logging symptom analysis: {str(e)}")
|
| 57 |
+
|
| 58 |
+
# ---------- Image Analysis Logging ----------
|
| 59 |
+
def log_image_analysis(self, analysis_data):
|
| 60 |
+
data = {
|
| 61 |
+
"id": analysis_data.get("id", str(uuid.uuid4())),
|
| 62 |
+
"user_id": analysis_data["user_id"],
|
| 63 |
+
"filename": analysis_data["filename"],
|
| 64 |
+
"analysis_result": analysis_data["result"],
|
| 65 |
+
"confidence": analysis_data["confidence"],
|
| 66 |
+
"created_at": datetime.utcnow().isoformat()
|
| 67 |
+
}
|
| 68 |
+
|
| 69 |
+
try:
|
| 70 |
+
response = self.client.table("image_analysis").insert(data).execute()
|
| 71 |
+
print("✅ Image analysis logged successfully:", response.data)
|
| 72 |
+
except Exception as e:
|
| 73 |
+
raise Exception(f"❌ Error logging image analysis: {str(e)}")
|
| 74 |
+
|
| 75 |
+
|
| 76 |
+
# Initialize database instance
|
| 77 |
+
db = Database()
|
finetune_models.py
ADDED
|
@@ -0,0 +1,373 @@
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
|
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|
|
|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Fine-tuning Script for Medical AI Models
|
| 3 |
+
Trains models on real medical datasets for production use
|
| 4 |
+
"""
|
| 5 |
+
|
| 6 |
+
import os
|
| 7 |
+
import torch
|
| 8 |
+
import pandas as pd
|
| 9 |
+
import numpy as np
|
| 10 |
+
from PIL import Image
|
| 11 |
+
from torch.utils.data import Dataset, DataLoader
|
| 12 |
+
from transformers import (
|
| 13 |
+
ViTImageProcessor,
|
| 14 |
+
ViTForImageClassification,
|
| 15 |
+
Trainer,
|
| 16 |
+
TrainingArguments,
|
| 17 |
+
AutoTokenizer,
|
| 18 |
+
AutoModelForSequenceClassification
|
| 19 |
+
)
|
| 20 |
+
from datasets import load_dataset
|
| 21 |
+
from sklearn.model_selection import train_test_split
|
| 22 |
+
import json
|
| 23 |
+
|
| 24 |
+
|
| 25 |
+
class SkinLesionDataset(Dataset):
|
| 26 |
+
"""Dataset for skin lesion images (HAM10000 format)"""
|
| 27 |
+
|
| 28 |
+
def __init__(self, image_paths, labels, processor):
|
| 29 |
+
self.image_paths = image_paths
|
| 30 |
+
self.labels = labels
|
| 31 |
+
self.processor = processor
|
| 32 |
+
|
| 33 |
+
def __len__(self):
|
| 34 |
+
return len(self.image_paths)
|
| 35 |
+
|
| 36 |
+
def __getitem__(self, idx):
|
| 37 |
+
image = Image.open(self.image_paths[idx]).convert('RGB')
|
| 38 |
+
encoding = self.processor(images=image, return_tensors="pt")
|
| 39 |
+
encoding = {key: val.squeeze() for key, val in encoding.items()}
|
| 40 |
+
encoding['labels'] = torch.tensor(self.labels[idx])
|
| 41 |
+
return encoding
|
| 42 |
+
|
| 43 |
+
|
| 44 |
+
class SymptomDataset(Dataset):
|
| 45 |
+
"""Dataset for symptom-to-disease classification"""
|
| 46 |
+
|
| 47 |
+
def __init__(self, texts, labels, tokenizer, max_length=128):
|
| 48 |
+
self.texts = texts
|
| 49 |
+
self.labels = labels
|
| 50 |
+
self.tokenizer = tokenizer
|
| 51 |
+
self.max_length = max_length
|
| 52 |
+
|
| 53 |
+
def __len__(self):
|
| 54 |
+
return len(self.texts)
|
| 55 |
+
|
| 56 |
+
def __getitem__(self, idx):
|
| 57 |
+
encoding = self.tokenizer(
|
| 58 |
+
self.texts[idx],
|
| 59 |
+
truncation=True,
|
| 60 |
+
padding='max_length',
|
| 61 |
+
max_length=self.max_length,
|
| 62 |
+
return_tensors='pt'
|
| 63 |
+
)
|
| 64 |
+
encoding = {key: val.squeeze() for key, val in encoding.items()}
|
| 65 |
+
encoding['labels'] = torch.tensor(self.labels[idx])
|
| 66 |
+
return encoding
|
| 67 |
+
|
| 68 |
+
|
| 69 |
+
class MedicalModelTrainer:
|
| 70 |
+
"""Fine-tune models on medical datasets"""
|
| 71 |
+
|
| 72 |
+
def __init__(self, output_dir="./trained_models"):
|
| 73 |
+
self.output_dir = output_dir
|
| 74 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 75 |
+
self.device = "cuda" if torch.cuda.is_available() else "cpu"
|
| 76 |
+
print(f"Using device: {self.device}")
|
| 77 |
+
|
| 78 |
+
def finetune_skin_model(self, data_dir, num_epochs=10):
|
| 79 |
+
"""
|
| 80 |
+
Fine-tune Vision Transformer on HAM10000 skin lesion dataset
|
| 81 |
+
|
| 82 |
+
Dataset structure:
|
| 83 |
+
data_dir/
|
| 84 |
+
├── images/
|
| 85 |
+
│ ├── image1.jpg
|
| 86 |
+
│ ├── image2.jpg
|
| 87 |
+
└── labels.csv (columns: image_id, diagnosis)
|
| 88 |
+
|
| 89 |
+
Download from: https://www.kaggle.com/datasets/kmader/skin-cancer-mnist-ham10000
|
| 90 |
+
"""
|
| 91 |
+
print("🔬 Fine-tuning Skin Condition Model...")
|
| 92 |
+
|
| 93 |
+
# Load dataset
|
| 94 |
+
try:
|
| 95 |
+
labels_df = pd.read_csv(os.path.join(data_dir, "HAM10000_metadata.csv"))
|
| 96 |
+
except FileNotFoundError:
|
| 97 |
+
print("❌ Dataset not found. Download HAM10000 from Kaggle:")
|
| 98 |
+
print(" kaggle datasets download -d kmader/skin-cancer-mnist-ham10000")
|
| 99 |
+
return None
|
| 100 |
+
|
| 101 |
+
# Map diagnoses to indices
|
| 102 |
+
diagnosis_map = {
|
| 103 |
+
'akiec': 0, # Actinic keratoses
|
| 104 |
+
'bcc': 1, # Basal cell carcinoma
|
| 105 |
+
'bkl': 2, # Benign keratosis
|
| 106 |
+
'df': 3, # Dermatofibroma
|
| 107 |
+
'mel': 4, # Melanoma
|
| 108 |
+
'nv': 5, # Melanocytic nevi
|
| 109 |
+
'vasc': 6 # Vascular lesions
|
| 110 |
+
}
|
| 111 |
+
|
| 112 |
+
labels_df['label'] = labels_df['dx'].map(diagnosis_map)
|
| 113 |
+
|
| 114 |
+
# Prepare image paths
|
| 115 |
+
image_dir = os.path.join(data_dir, "images")
|
| 116 |
+
labels_df['image_path'] = labels_df['image_id'].apply(
|
| 117 |
+
lambda x: os.path.join(image_dir, f"{x}.jpg")
|
| 118 |
+
)
|
| 119 |
+
|
| 120 |
+
# Filter existing images
|
| 121 |
+
labels_df = labels_df[labels_df['image_path'].apply(os.path.exists)]
|
| 122 |
+
|
| 123 |
+
print(f"📊 Loaded {len(labels_df)} images")
|
| 124 |
+
|
| 125 |
+
# Split dataset
|
| 126 |
+
train_df, val_df = train_test_split(
|
| 127 |
+
labels_df,
|
| 128 |
+
test_size=0.2,
|
| 129 |
+
stratify=labels_df['label'],
|
| 130 |
+
random_state=42
|
| 131 |
+
)
|
| 132 |
+
|
| 133 |
+
# Load processor and model
|
| 134 |
+
processor = ViTImageProcessor.from_pretrained('google/vit-base-patch16-224')
|
| 135 |
+
model = ViTForImageClassification.from_pretrained(
|
| 136 |
+
'google/vit-base-patch16-224',
|
| 137 |
+
num_labels=len(diagnosis_map),
|
| 138 |
+
ignore_mismatched_sizes=True
|
| 139 |
+
)
|
| 140 |
+
|
| 141 |
+
# Create datasets
|
| 142 |
+
train_dataset = SkinLesionDataset(
|
| 143 |
+
train_df['image_path'].tolist(),
|
| 144 |
+
train_df['label'].tolist(),
|
| 145 |
+
processor
|
| 146 |
+
)
|
| 147 |
+
|
| 148 |
+
val_dataset = SkinLesionDataset(
|
| 149 |
+
val_df['image_path'].tolist(),
|
| 150 |
+
val_df['label'].tolist(),
|
| 151 |
+
processor
|
| 152 |
+
)
|
| 153 |
+
|
| 154 |
+
# Training arguments
|
| 155 |
+
training_args = TrainingArguments(
|
| 156 |
+
output_dir=os.path.join(self.output_dir, "skin-condition-vit"),
|
| 157 |
+
evaluation_strategy="epoch",
|
| 158 |
+
save_strategy="epoch",
|
| 159 |
+
learning_rate=2e-5,
|
| 160 |
+
per_device_train_batch_size=16,
|
| 161 |
+
per_device_eval_batch_size=16,
|
| 162 |
+
num_train_epochs=num_epochs,
|
| 163 |
+
weight_decay=0.01,
|
| 164 |
+
load_best_model_at_end=True,
|
| 165 |
+
metric_for_best_model="accuracy",
|
| 166 |
+
logging_dir='./logs',
|
| 167 |
+
logging_steps=100,
|
| 168 |
+
save_total_limit=2
|
| 169 |
+
)
|
| 170 |
+
|
| 171 |
+
# Define metrics
|
| 172 |
+
def compute_metrics(eval_pred):
|
| 173 |
+
predictions, labels = eval_pred
|
| 174 |
+
predictions = np.argmax(predictions, axis=1)
|
| 175 |
+
accuracy = (predictions == labels).mean()
|
| 176 |
+
return {"accuracy": accuracy}
|
| 177 |
+
|
| 178 |
+
# Create trainer
|
| 179 |
+
trainer = Trainer(
|
| 180 |
+
model=model,
|
| 181 |
+
args=training_args,
|
| 182 |
+
train_dataset=train_dataset,
|
| 183 |
+
eval_dataset=val_dataset,
|
| 184 |
+
compute_metrics=compute_metrics
|
| 185 |
+
)
|
| 186 |
+
|
| 187 |
+
# Train
|
| 188 |
+
print("🏋️ Training started...")
|
| 189 |
+
trainer.train()
|
| 190 |
+
|
| 191 |
+
# Save model
|
| 192 |
+
model_path = os.path.join(self.output_dir, "skin-condition-vit-final")
|
| 193 |
+
trainer.save_model(model_path)
|
| 194 |
+
processor.save_pretrained(model_path)
|
| 195 |
+
|
| 196 |
+
# Save label mapping
|
| 197 |
+
with open(os.path.join(model_path, "label_map.json"), "w") as f:
|
| 198 |
+
reverse_map = {v: k for k, v in diagnosis_map.items()}
|
| 199 |
+
json.dump(reverse_map, f)
|
| 200 |
+
|
| 201 |
+
print(f"✅ Model saved to {model_path}")
|
| 202 |
+
return model_path
|
| 203 |
+
|
| 204 |
+
def finetune_symptom_model(self, data_file, num_epochs=5):
|
| 205 |
+
"""
|
| 206 |
+
Fine-tune BERT on symptom-to-disease dataset
|
| 207 |
+
|
| 208 |
+
Dataset format (CSV):
|
| 209 |
+
symptoms,disease
|
| 210 |
+
"headache fever cough","Influenza"
|
| 211 |
+
"chest pain shortness of breath","Heart Condition"
|
| 212 |
+
|
| 213 |
+
Download from Kaggle: Disease Symptom Prediction Dataset
|
| 214 |
+
"""
|
| 215 |
+
print("🔬 Fine-tuning Symptom Analysis Model...")
|
| 216 |
+
|
| 217 |
+
try:
|
| 218 |
+
# Load dataset
|
| 219 |
+
df = pd.read_csv(data_file)
|
| 220 |
+
|
| 221 |
+
# Create disease label mapping
|
| 222 |
+
diseases = df['disease'].unique()
|
| 223 |
+
disease_map = {disease: idx for idx, disease in enumerate(diseases)}
|
| 224 |
+
df['label'] = df['disease'].map(disease_map)
|
| 225 |
+
|
| 226 |
+
print(f"📊 Loaded {len(df)} examples with {len(diseases)} diseases")
|
| 227 |
+
|
| 228 |
+
# Split dataset
|
| 229 |
+
train_df, val_df = train_test_split(
|
| 230 |
+
df,
|
| 231 |
+
test_size=0.2,
|
| 232 |
+
stratify=df['label'],
|
| 233 |
+
random_state=42
|
| 234 |
+
)
|
| 235 |
+
|
| 236 |
+
# Load tokenizer and model
|
| 237 |
+
model_name = "microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract"
|
| 238 |
+
tokenizer = AutoTokenizer.from_pretrained(model_name)
|
| 239 |
+
model = AutoModelForSequenceClassification.from_pretrained(
|
| 240 |
+
model_name,
|
| 241 |
+
num_labels=len(diseases)
|
| 242 |
+
)
|
| 243 |
+
|
| 244 |
+
# Create datasets
|
| 245 |
+
train_dataset = SymptomDataset(
|
| 246 |
+
train_df['symptoms'].tolist(),
|
| 247 |
+
train_df['label'].tolist(),
|
| 248 |
+
tokenizer
|
| 249 |
+
)
|
| 250 |
+
|
| 251 |
+
val_dataset = SymptomDataset(
|
| 252 |
+
val_df['symptoms'].tolist(),
|
| 253 |
+
val_df['label'].tolist(),
|
| 254 |
+
tokenizer
|
| 255 |
+
)
|
| 256 |
+
|
| 257 |
+
# Training arguments
|
| 258 |
+
training_args = TrainingArguments(
|
| 259 |
+
output_dir=os.path.join(self.output_dir, "symptom-bert"),
|
| 260 |
+
evaluation_strategy="epoch",
|
| 261 |
+
save_strategy="epoch",
|
| 262 |
+
learning_rate=2e-5,
|
| 263 |
+
per_device_train_batch_size=16,
|
| 264 |
+
per_device_eval_batch_size=16,
|
| 265 |
+
num_train_epochs=num_epochs,
|
| 266 |
+
weight_decay=0.01,
|
| 267 |
+
load_best_model_at_end=True,
|
| 268 |
+
metric_for_best_model="accuracy",
|
| 269 |
+
logging_steps=50
|
| 270 |
+
)
|
| 271 |
+
|
| 272 |
+
# Define metrics
|
| 273 |
+
def compute_metrics(eval_pred):
|
| 274 |
+
predictions, labels = eval_pred
|
| 275 |
+
predictions = np.argmax(predictions, axis=1)
|
| 276 |
+
accuracy = (predictions == labels).mean()
|
| 277 |
+
return {"accuracy": accuracy}
|
| 278 |
+
|
| 279 |
+
# Create trainer
|
| 280 |
+
trainer = Trainer(
|
| 281 |
+
model=model,
|
| 282 |
+
args=training_args,
|
| 283 |
+
train_dataset=train_dataset,
|
| 284 |
+
eval_dataset=val_dataset,
|
| 285 |
+
compute_metrics=compute_metrics
|
| 286 |
+
)
|
| 287 |
+
|
| 288 |
+
# Train
|
| 289 |
+
print("🏋️ Training started...")
|
| 290 |
+
trainer.train()
|
| 291 |
+
|
| 292 |
+
# Save model
|
| 293 |
+
model_path = os.path.join(self.output_dir, "symptom-bert-final")
|
| 294 |
+
trainer.save_model(model_path)
|
| 295 |
+
tokenizer.save_pretrained(model_path)
|
| 296 |
+
|
| 297 |
+
# Save label mapping
|
| 298 |
+
with open(os.path.join(model_path, "disease_map.json"), "w") as f:
|
| 299 |
+
reverse_map = {v: k for k, v in disease_map.items()}
|
| 300 |
+
json.dump(reverse_map, f)
|
| 301 |
+
|
| 302 |
+
print(f"✅ Model saved to {model_path}")
|
| 303 |
+
return model_path
|
| 304 |
+
|
| 305 |
+
except FileNotFoundError:
|
| 306 |
+
print("❌ Dataset not found. Create or download symptom-disease dataset")
|
| 307 |
+
print(" Format: CSV with columns 'symptoms' and 'disease'")
|
| 308 |
+
return None
|
| 309 |
+
|
| 310 |
+
def create_sample_symptom_dataset(self, output_file="symptom_dataset.csv"):
|
| 311 |
+
"""Create a sample symptom dataset for testing"""
|
| 312 |
+
print("📝 Creating sample symptom dataset...")
|
| 313 |
+
|
| 314 |
+
sample_data = [
|
| 315 |
+
("headache fever fatigue", "Influenza"),
|
| 316 |
+
("cough shortness of breath chest pain", "Pneumonia"),
|
| 317 |
+
("nausea vomiting diarrhea", "Gastroenteritis"),
|
| 318 |
+
("rash itching redness", "Allergic Reaction"),
|
| 319 |
+
("sore throat fever headache", "Strep Throat"),
|
| 320 |
+
("fatigue weakness pale skin", "Anemia"),
|
| 321 |
+
("headache sensitivity to light nausea", "Migraine"),
|
| 322 |
+
("chest pain shortness of breath", "Heart Condition"),
|
| 323 |
+
("fever cough body aches", "Common Cold"),
|
| 324 |
+
("abdominal pain nausea fever", "Appendicitis")
|
| 325 |
+
] * 50 # Duplicate for larger dataset
|
| 326 |
+
|
| 327 |
+
df = pd.DataFrame(sample_data, columns=['symptoms', 'disease'])
|
| 328 |
+
df.to_csv(output_file, index=False)
|
| 329 |
+
|
| 330 |
+
print(f"✅ Sample dataset saved to {output_file}")
|
| 331 |
+
return output_file
|
| 332 |
+
|
| 333 |
+
|
| 334 |
+
def main():
|
| 335 |
+
"""Main training pipeline"""
|
| 336 |
+
trainer = MedicalModelTrainer()
|
| 337 |
+
|
| 338 |
+
print("=" * 60)
|
| 339 |
+
print("🏥 Medical AI Model Fine-tuning Pipeline")
|
| 340 |
+
print("=" * 60)
|
| 341 |
+
|
| 342 |
+
# Option 1: Fine-tune skin condition model
|
| 343 |
+
print("\n1️⃣ Skin Condition Model")
|
| 344 |
+
print(" Dataset: HAM10000 (download from Kaggle)")
|
| 345 |
+
print(" Command: kaggle datasets download -d kmader/skin-cancer-mnist-ham10000")
|
| 346 |
+
|
| 347 |
+
skin_data_dir = "./HAM10000"
|
| 348 |
+
if os.path.exists(skin_data_dir):
|
| 349 |
+
trainer.finetune_skin_model(skin_data_dir, num_epochs=3)
|
| 350 |
+
else:
|
| 351 |
+
print(" ⏭️ Skipping (dataset not found)")
|
| 352 |
+
|
| 353 |
+
# Option 2: Fine-tune symptom model
|
| 354 |
+
print("\n2️⃣ Symptom Analysis Model")
|
| 355 |
+
|
| 356 |
+
symptom_dataset = "./symptom_dataset.csv"
|
| 357 |
+
if not os.path.exists(symptom_dataset):
|
| 358 |
+
symptom_dataset = trainer.create_sample_symptom_dataset()
|
| 359 |
+
|
| 360 |
+
trainer.finetune_symptom_model(symptom_dataset, num_epochs=3)
|
| 361 |
+
|
| 362 |
+
print("\n" + "=" * 60)
|
| 363 |
+
print("✅ Training complete!")
|
| 364 |
+
print("=" * 60)
|
| 365 |
+
print("\n📦 Trained models saved in ./trained_models/")
|
| 366 |
+
print("\n🚀 To use in production:")
|
| 367 |
+
print(" 1. Update ai_models.py to load from ./trained_models/")
|
| 368 |
+
print(" 2. Replace model_name with local path")
|
| 369 |
+
print(" 3. Test with test_api.py")
|
| 370 |
+
|
| 371 |
+
|
| 372 |
+
if __name__ == "__main__":
|
| 373 |
+
main()
|
main.py
ADDED
|
@@ -0,0 +1,198 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
| 1 |
+
from fastapi import FastAPI, UploadFile, File, Form, HTTPException
|
| 2 |
+
from fastapi.middleware.cors import CORSMiddleware
|
| 3 |
+
from fastapi.staticfiles import StaticFiles
|
| 4 |
+
from pydantic import BaseModel
|
| 5 |
+
import uuid
|
| 6 |
+
import os
|
| 7 |
+
from datetime import datetime
|
| 8 |
+
from config import config
|
| 9 |
+
from database import db
|
| 10 |
+
from ai_model import ai_models
|
| 11 |
+
|
| 12 |
+
app = FastAPI(
|
| 13 |
+
title="MobileDoc API",
|
| 14 |
+
description="Mobile Doctor Backend MVP",
|
| 15 |
+
version="1.0.0"
|
| 16 |
+
)
|
| 17 |
+
|
| 18 |
+
# ---------------- Middleware ----------------
|
| 19 |
+
app.add_middleware(
|
| 20 |
+
CORSMiddleware,
|
| 21 |
+
allow_origins=["*"],
|
| 22 |
+
allow_credentials=True,
|
| 23 |
+
allow_methods=["*"],
|
| 24 |
+
allow_headers=["*"],
|
| 25 |
+
)
|
| 26 |
+
|
| 27 |
+
# ---------------- File Handling ----------------
|
| 28 |
+
os.makedirs(config.UPLOAD_DIR, exist_ok=True)
|
| 29 |
+
app.mount("/uploads", StaticFiles(directory=config.UPLOAD_DIR), name="uploads")
|
| 30 |
+
|
| 31 |
+
# ---------------- Pydantic Models ----------------
|
| 32 |
+
class UserProfile(BaseModel):
|
| 33 |
+
username: str
|
| 34 |
+
email: str
|
| 35 |
+
age: int
|
| 36 |
+
gender: str
|
| 37 |
+
allergies: str = ""
|
| 38 |
+
conditions: str = ""
|
| 39 |
+
|
| 40 |
+
class LoginRequest(BaseModel):
|
| 41 |
+
username: str
|
| 42 |
+
|
| 43 |
+
class SymptomsRequest(BaseModel):
|
| 44 |
+
user_id: str
|
| 45 |
+
symptoms: str
|
| 46 |
+
|
| 47 |
+
class AnalysisResponse(BaseModel):
|
| 48 |
+
success: bool
|
| 49 |
+
data: dict
|
| 50 |
+
message: str = ""
|
| 51 |
+
|
| 52 |
+
# ---------------- Routes ----------------
|
| 53 |
+
@app.get("/")
|
| 54 |
+
async def root():
|
| 55 |
+
return {"status": "AI Health Diagnostics API Running", "timestamp": datetime.now().isoformat()}
|
| 56 |
+
|
| 57 |
+
|
| 58 |
+
# ---------- Create User Profile ----------
|
| 59 |
+
@app.post("/create-profile", response_model=AnalysisResponse)
|
| 60 |
+
async def create_profile(profile: UserProfile):
|
| 61 |
+
try:
|
| 62 |
+
user_id = str(uuid.uuid4())
|
| 63 |
+
user_data = {
|
| 64 |
+
"id": user_id,
|
| 65 |
+
"username": profile.username,
|
| 66 |
+
"email": profile.email,
|
| 67 |
+
"age": profile.age,
|
| 68 |
+
"gender": profile.gender,
|
| 69 |
+
"allergies": profile.allergies,
|
| 70 |
+
"conditions": profile.conditions
|
| 71 |
+
}
|
| 72 |
+
|
| 73 |
+
db.create_user(user_data)
|
| 74 |
+
|
| 75 |
+
return AnalysisResponse(
|
| 76 |
+
success=True,
|
| 77 |
+
data={"user_id": user_id},
|
| 78 |
+
message="Profile created successfully"
|
| 79 |
+
)
|
| 80 |
+
except Exception as e:
|
| 81 |
+
raise HTTPException(status_code=500, detail=str(e))
|
| 82 |
+
|
| 83 |
+
|
| 84 |
+
# ---------- Check User Profile ----------
|
| 85 |
+
@app.post("/check-profile", response_model=AnalysisResponse)
|
| 86 |
+
async def check_profile(request: LoginRequest):
|
| 87 |
+
try:
|
| 88 |
+
response = db.client.table("users").select("*").eq("username", request.username).execute()
|
| 89 |
+
|
| 90 |
+
users = response.data or []
|
| 91 |
+
if not users:
|
| 92 |
+
raise HTTPException(status_code=404, detail="User not found")
|
| 93 |
+
|
| 94 |
+
user = users[0]
|
| 95 |
+
return AnalysisResponse(
|
| 96 |
+
success=True,
|
| 97 |
+
data={"user_id": user["id"], "username": user["username"]},
|
| 98 |
+
message="Profile found"
|
| 99 |
+
)
|
| 100 |
+
except Exception as e:
|
| 101 |
+
raise HTTPException(status_code=500, detail=str(e))
|
| 102 |
+
|
| 103 |
+
|
| 104 |
+
# ---------- Symptom Check ----------
|
| 105 |
+
@app.post("/symptom-check", response_model=AnalysisResponse)
|
| 106 |
+
async def symptom_check(request: SymptomsRequest):
|
| 107 |
+
try:
|
| 108 |
+
# Fetch user from Supabase
|
| 109 |
+
user_response = db.client.table("users").select("*").eq("id", request.user_id).execute()
|
| 110 |
+
users = user_response.data or []
|
| 111 |
+
if not users:
|
| 112 |
+
raise HTTPException(status_code=404, detail="User not found")
|
| 113 |
+
|
| 114 |
+
user_profile = users[0]
|
| 115 |
+
|
| 116 |
+
# Run AI analysis
|
| 117 |
+
analysis_result = ai_models.analyze_symptoms(request.symptoms, user_profile)
|
| 118 |
+
|
| 119 |
+
# Log analysis
|
| 120 |
+
db.log_symptom_analysis({
|
| 121 |
+
"id": str(uuid.uuid4()),
|
| 122 |
+
"user_id": request.user_id,
|
| 123 |
+
"symptoms": request.symptoms,
|
| 124 |
+
"result": analysis_result
|
| 125 |
+
})
|
| 126 |
+
|
| 127 |
+
return AnalysisResponse(
|
| 128 |
+
success=True,
|
| 129 |
+
data=analysis_result,
|
| 130 |
+
message="Symptoms analyzed successfully"
|
| 131 |
+
)
|
| 132 |
+
except Exception as e:
|
| 133 |
+
raise HTTPException(status_code=500, detail=str(e))
|
| 134 |
+
|
| 135 |
+
|
| 136 |
+
# ---------- Image Analysis ----------
|
| 137 |
+
@app.post("/analyze-image", response_model=AnalysisResponse)
|
| 138 |
+
async def analyze_image(
|
| 139 |
+
user_id: str = Form(...),
|
| 140 |
+
image_type: str = Form("skin"),
|
| 141 |
+
file: UploadFile = File(...)
|
| 142 |
+
):
|
| 143 |
+
try:
|
| 144 |
+
allowed_types = ["image/jpeg", "image/png", "image/jpg"]
|
| 145 |
+
if file.content_type not in allowed_types:
|
| 146 |
+
raise HTTPException(status_code=400, detail="Invalid image format")
|
| 147 |
+
|
| 148 |
+
image_data = await file.read()
|
| 149 |
+
if len(image_data) > config.MAX_IMAGE_SIZE:
|
| 150 |
+
raise HTTPException(status_code=400, detail="Image too large")
|
| 151 |
+
|
| 152 |
+
analysis_result = ai_models.analyze_image(image_data, image_type)
|
| 153 |
+
|
| 154 |
+
filename = f"{uuid.uuid4()}_{file.filename}"
|
| 155 |
+
file_path = os.path.join(config.UPLOAD_DIR, filename)
|
| 156 |
+
with open(file_path, "wb") as f:
|
| 157 |
+
f.write(image_data)
|
| 158 |
+
|
| 159 |
+
db.log_image_analysis({
|
| 160 |
+
"id": str(uuid.uuid4()),
|
| 161 |
+
"user_id": user_id,
|
| 162 |
+
"filename": filename,
|
| 163 |
+
"result": analysis_result,
|
| 164 |
+
"confidence": analysis_result.get("confidence", 0.0)
|
| 165 |
+
})
|
| 166 |
+
|
| 167 |
+
return AnalysisResponse(
|
| 168 |
+
success=True,
|
| 169 |
+
data=analysis_result,
|
| 170 |
+
message="Image analyzed successfully"
|
| 171 |
+
)
|
| 172 |
+
except Exception as e:
|
| 173 |
+
raise HTTPException(status_code=500, detail=str(e))
|
| 174 |
+
|
| 175 |
+
|
| 176 |
+
# ---------- User History ----------
|
| 177 |
+
@app.get("/user-history/{user_id}", response_model=AnalysisResponse)
|
| 178 |
+
async def get_user_history(user_id: str):
|
| 179 |
+
try:
|
| 180 |
+
symptoms = db.client.table("symptoms_history").select("*").eq("user_id", user_id).order("created_at", desc=True).limit(10).execute()
|
| 181 |
+
images = db.client.table("image_analysis").select("*").eq("user_id", user_id).order("created_at", desc=True).limit(10).execute()
|
| 182 |
+
|
| 183 |
+
return AnalysisResponse(
|
| 184 |
+
success=True,
|
| 185 |
+
data={
|
| 186 |
+
"symptom_checks": symptoms.data or [],
|
| 187 |
+
"image_analyses": images.data or []
|
| 188 |
+
},
|
| 189 |
+
message="History retrieved successfully"
|
| 190 |
+
)
|
| 191 |
+
except Exception as e:
|
| 192 |
+
raise HTTPException(status_code=500, detail=str(e))
|
| 193 |
+
|
| 194 |
+
|
| 195 |
+
# ---------- Run Server ----------
|
| 196 |
+
if __name__ == "__main__":
|
| 197 |
+
import uvicorn
|
| 198 |
+
uvicorn.run(app, host="0.0.0.0", port=8000)
|
requirements.txt
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
anyio==4.11.0
|
| 2 |
+
certifi==2025.11.12
|
| 3 |
+
click==8.3.0
|
| 4 |
+
colorama==0.4.6
|
| 5 |
+
filelock==3.20.0
|
| 6 |
+
fsspec==2025.10.0
|
| 7 |
+
h11==0.16.0
|
| 8 |
+
hf-xet==1.2.0
|
| 9 |
+
httpcore==1.0.9
|
| 10 |
+
httpx==0.28.1
|
| 11 |
+
huggingface_hub==1.1.4
|
| 12 |
+
idna==3.11
|
| 13 |
+
packaging==25.0
|
| 14 |
+
PyYAML==6.0.3
|
| 15 |
+
shellingham==1.5.4
|
| 16 |
+
sniffio==1.3.1
|
| 17 |
+
tqdm==4.67.1
|
| 18 |
+
typer-slim==0.20.0
|
| 19 |
+
typing_extensions==4.15.0
|
test_api.py
ADDED
|
@@ -0,0 +1,447 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
| 1 |
+
"""
|
| 2 |
+
Comprehensive API Testing Script
|
| 3 |
+
Tests all endpoints with realistic medical scenarios
|
| 4 |
+
"""
|
| 5 |
+
|
| 6 |
+
import requests
|
| 7 |
+
import json
|
| 8 |
+
import time
|
| 9 |
+
from typing import Dict, List
|
| 10 |
+
import os
|
| 11 |
+
|
| 12 |
+
|
| 13 |
+
class HealthAPITester:
|
| 14 |
+
"""Test suite for AI Health Diagnostics API"""
|
| 15 |
+
|
| 16 |
+
def __init__(self, base_url="http://localhost:8000"):
|
| 17 |
+
self.base_url = base_url
|
| 18 |
+
self.user_ids = []
|
| 19 |
+
self.test_results = []
|
| 20 |
+
|
| 21 |
+
def print_section(self, title: str):
|
| 22 |
+
"""Print formatted section header"""
|
| 23 |
+
print("\n" + "=" * 70)
|
| 24 |
+
print(f" {title}")
|
| 25 |
+
print("=" * 70)
|
| 26 |
+
|
| 27 |
+
def print_result(self, test_name: str, passed: bool, details: str = ""):
|
| 28 |
+
"""Print test result"""
|
| 29 |
+
status = "✅ PASS" if passed else "❌ FAIL"
|
| 30 |
+
print(f"{status} | {test_name}")
|
| 31 |
+
if details:
|
| 32 |
+
print(f" {details}")
|
| 33 |
+
self.test_results.append((test_name, passed))
|
| 34 |
+
|
| 35 |
+
def test_health_check(self):
|
| 36 |
+
"""Test root endpoint"""
|
| 37 |
+
self.print_section("1. Health Check")
|
| 38 |
+
|
| 39 |
+
try:
|
| 40 |
+
response = requests.get(f"{self.base_url}/")
|
| 41 |
+
passed = response.status_code == 200
|
| 42 |
+
details = response.json().get("status", "No status")
|
| 43 |
+
self.print_result("API Health Check", passed, details)
|
| 44 |
+
return passed
|
| 45 |
+
except Exception as e:
|
| 46 |
+
self.print_result("API Health Check", False, str(e))
|
| 47 |
+
return False
|
| 48 |
+
|
| 49 |
+
def test_create_profiles(self):
|
| 50 |
+
"""Test profile creation with various user types"""
|
| 51 |
+
self.print_section("2. User Profile Creation")
|
| 52 |
+
|
| 53 |
+
test_profiles = [
|
| 54 |
+
{
|
| 55 |
+
"name": "Young Adult - No Conditions",
|
| 56 |
+
"data": {
|
| 57 |
+
"age": 25,
|
| 58 |
+
"gender": "female",
|
| 59 |
+
"allergies": "",
|
| 60 |
+
"conditions": ""
|
| 61 |
+
}
|
| 62 |
+
},
|
| 63 |
+
{
|
| 64 |
+
"name": "Middle-aged - Multiple Allergies",
|
| 65 |
+
"data": {
|
| 66 |
+
"age": 45,
|
| 67 |
+
"gender": "male",
|
| 68 |
+
"allergies": "penicillin, shellfish",
|
| 69 |
+
"conditions": "hypertension"
|
| 70 |
+
}
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "Senior - Chronic Conditions",
|
| 74 |
+
"data": {
|
| 75 |
+
"age": 68,
|
| 76 |
+
"gender": "female",
|
| 77 |
+
"allergies": "sulfa drugs",
|
| 78 |
+
"conditions": "diabetes, arthritis"
|
| 79 |
+
}
|
| 80 |
+
},
|
| 81 |
+
{
|
| 82 |
+
"name": "Child Profile",
|
| 83 |
+
"data": {
|
| 84 |
+
"age": 8,
|
| 85 |
+
"gender": "male",
|
| 86 |
+
"allergies": "peanuts",
|
| 87 |
+
"conditions": "asthma"
|
| 88 |
+
}
|
| 89 |
+
}
|
| 90 |
+
]
|
| 91 |
+
|
| 92 |
+
for profile in test_profiles:
|
| 93 |
+
try:
|
| 94 |
+
response = requests.post(
|
| 95 |
+
f"{self.base_url}/create-profile",
|
| 96 |
+
json=profile["data"]
|
| 97 |
+
)
|
| 98 |
+
|
| 99 |
+
if response.status_code == 200:
|
| 100 |
+
result = response.json()
|
| 101 |
+
user_id = result["data"]["user_id"]
|
| 102 |
+
self.user_ids.append({
|
| 103 |
+
"name": profile["name"],
|
| 104 |
+
"id": user_id,
|
| 105 |
+
"profile": profile["data"]
|
| 106 |
+
})
|
| 107 |
+
self.print_result(
|
| 108 |
+
f"Create Profile: {profile['name']}",
|
| 109 |
+
True,
|
| 110 |
+
f"User ID: {user_id[:8]}..."
|
| 111 |
+
)
|
| 112 |
+
else:
|
| 113 |
+
self.print_result(
|
| 114 |
+
f"Create Profile: {profile['name']}",
|
| 115 |
+
False,
|
| 116 |
+
f"Status: {response.status_code}"
|
| 117 |
+
)
|
| 118 |
+
except Exception as e:
|
| 119 |
+
self.print_result(
|
| 120 |
+
f"Create Profile: {profile['name']}",
|
| 121 |
+
False,
|
| 122 |
+
str(e)
|
| 123 |
+
)
|
| 124 |
+
|
| 125 |
+
def test_symptom_analysis(self):
|
| 126 |
+
"""Test symptom checking with realistic scenarios"""
|
| 127 |
+
self.print_section("3. Symptom Analysis")
|
| 128 |
+
|
| 129 |
+
test_cases = [
|
| 130 |
+
{
|
| 131 |
+
"name": "Common Cold Symptoms",
|
| 132 |
+
"symptoms": "runny nose, cough, sore throat, mild fever, fatigue",
|
| 133 |
+
"expected_conditions": ["Common Cold", "Influenza"]
|
| 134 |
+
},
|
| 135 |
+
{
|
| 136 |
+
"name": "Flu-like Symptoms",
|
| 137 |
+
"symptoms": "high fever, severe headache, body aches, cough, fatigue",
|
| 138 |
+
"expected_conditions": ["Influenza", "COVID-19"]
|
| 139 |
+
},
|
| 140 |
+
{
|
| 141 |
+
"name": "Food Poisoning",
|
| 142 |
+
"symptoms": "nausea, vomiting, diarrhea, abdominal cramps",
|
| 143 |
+
"expected_conditions": ["Gastroenteritis", "Food Poisoning"]
|
| 144 |
+
},
|
| 145 |
+
{
|
| 146 |
+
"name": "Migraine Symptoms",
|
| 147 |
+
"symptoms": "severe headache, sensitivity to light, nausea",
|
| 148 |
+
"expected_conditions": ["Migraine"]
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"name": "Allergic Reaction",
|
| 152 |
+
"symptoms": "rash, itching, swelling, redness",
|
| 153 |
+
"expected_conditions": ["Allergic Reaction"]
|
| 154 |
+
},
|
| 155 |
+
{
|
| 156 |
+
"name": "Respiratory Infection",
|
| 157 |
+
"symptoms": "persistent cough, shortness of breath, chest pain, fever",
|
| 158 |
+
"expected_conditions": ["Pneumonia", "Bronchitis"]
|
| 159 |
+
},
|
| 160 |
+
{
|
| 161 |
+
"name": "Emergency Symptoms",
|
| 162 |
+
"symptoms": "severe chest pain, difficulty breathing, confusion",
|
| 163 |
+
"expected_conditions": ["Cardiac Issue", "Heart Condition"]
|
| 164 |
+
}
|
| 165 |
+
]
|
| 166 |
+
|
| 167 |
+
if not self.user_ids:
|
| 168 |
+
self.print_result("Symptom Analysis", False, "No user profiles available")
|
| 169 |
+
return
|
| 170 |
+
|
| 171 |
+
user = self.user_ids[0] # Use first user
|
| 172 |
+
|
| 173 |
+
for case in test_cases:
|
| 174 |
+
try:
|
| 175 |
+
response = requests.post(
|
| 176 |
+
f"{self.base_url}/symptom-check",
|
| 177 |
+
json={
|
| 178 |
+
"user_id": user["id"],
|
| 179 |
+
"symptoms": case["symptoms"]
|
| 180 |
+
}
|
| 181 |
+
)
|
| 182 |
+
|
| 183 |
+
if response.status_code == 200:
|
| 184 |
+
result = response.json()
|
| 185 |
+
conditions = result["data"]["possible_conditions"]
|
| 186 |
+
|
| 187 |
+
# Check if any expected condition is in top 3 results
|
| 188 |
+
detected = [c["condition"] for c in conditions[:3]]
|
| 189 |
+
found_match = any(
|
| 190 |
+
exp in detected
|
| 191 |
+
for exp in case["expected_conditions"]
|
| 192 |
+
)
|
| 193 |
+
|
| 194 |
+
if conditions:
|
| 195 |
+
top_condition = conditions[0]
|
| 196 |
+
details = (
|
| 197 |
+
f"{top_condition['condition']} "
|
| 198 |
+
f"(confidence: {top_condition['confidence']:.2f}, "
|
| 199 |
+
f"urgency: {top_condition['urgency']})"
|
| 200 |
+
)
|
| 201 |
+
self.print_result(
|
| 202 |
+
f"Analyze: {case['name']}",
|
| 203 |
+
True,
|
| 204 |
+
details
|
| 205 |
+
)
|
| 206 |
+
else:
|
| 207 |
+
self.print_result(
|
| 208 |
+
f"Analyze: {case['name']}",
|
| 209 |
+
False,
|
| 210 |
+
"No conditions detected"
|
| 211 |
+
)
|
| 212 |
+
else:
|
| 213 |
+
self.print_result(
|
| 214 |
+
f"Analyze: {case['name']}",
|
| 215 |
+
False,
|
| 216 |
+
f"Status: {response.status_code}"
|
| 217 |
+
)
|
| 218 |
+
|
| 219 |
+
time.sleep(0.5) # Rate limiting
|
| 220 |
+
|
| 221 |
+
except Exception as e:
|
| 222 |
+
self.print_result(
|
| 223 |
+
f"Analyze: {case['name']}",
|
| 224 |
+
False,
|
| 225 |
+
str(e)
|
| 226 |
+
)
|
| 227 |
+
|
| 228 |
+
def test_image_analysis(self):
|
| 229 |
+
"""Test image analysis (with synthetic images)"""
|
| 230 |
+
self.print_section("4. Medical Image Analysis")
|
| 231 |
+
|
| 232 |
+
# Create sample test images if they don't exist
|
| 233 |
+
test_images = self._create_test_images()
|
| 234 |
+
|
| 235 |
+
if not self.user_ids:
|
| 236 |
+
self.print_result("Image Analysis", False, "No user profiles available")
|
| 237 |
+
return
|
| 238 |
+
|
| 239 |
+
user = self.user_ids[0]
|
| 240 |
+
|
| 241 |
+
for image_file, image_type in test_images:
|
| 242 |
+
if not os.path.exists(image_file):
|
| 243 |
+
continue
|
| 244 |
+
|
| 245 |
+
try:
|
| 246 |
+
with open(image_file, 'rb') as f:
|
| 247 |
+
files = {'file': (image_file, f, 'image/jpeg')}
|
| 248 |
+
data = {
|
| 249 |
+
'user_id': user["id"],
|
| 250 |
+
'image_type': image_type
|
| 251 |
+
}
|
| 252 |
+
|
| 253 |
+
response = requests.post(
|
| 254 |
+
f"{self.base_url}/analyze-image",
|
| 255 |
+
files=files,
|
| 256 |
+
data=data
|
| 257 |
+
)
|
| 258 |
+
|
| 259 |
+
if response.status_code == 200:
|
| 260 |
+
result = response.json()
|
| 261 |
+
analysis = result["data"]
|
| 262 |
+
details = (
|
| 263 |
+
f"{analysis['detected_condition']} "
|
| 264 |
+
f"(confidence: {analysis['confidence']:.2f}, "
|
| 265 |
+
f"urgency: {analysis['urgency']})"
|
| 266 |
+
)
|
| 267 |
+
self.print_result(
|
| 268 |
+
f"Analyze Image: {os.path.basename(image_file)}",
|
| 269 |
+
True,
|
| 270 |
+
details
|
| 271 |
+
)
|
| 272 |
+
else:
|
| 273 |
+
self.print_result(
|
| 274 |
+
f"Analyze Image: {os.path.basename(image_file)}",
|
| 275 |
+
False,
|
| 276 |
+
f"Status: {response.status_code}"
|
| 277 |
+
)
|
| 278 |
+
|
| 279 |
+
time.sleep(0.5)
|
| 280 |
+
|
| 281 |
+
except Exception as e:
|
| 282 |
+
self.print_result(
|
| 283 |
+
f"Analyze Image: {os.path.basename(image_file)}",
|
| 284 |
+
False,
|
| 285 |
+
str(e)
|
| 286 |
+
)
|
| 287 |
+
|
| 288 |
+
def test_user_history(self):
|
| 289 |
+
"""Test retrieving user history"""
|
| 290 |
+
self.print_section("5. User History Retrieval")
|
| 291 |
+
|
| 292 |
+
if not self.user_ids:
|
| 293 |
+
self.print_result("User History", False, "No user profiles available")
|
| 294 |
+
return
|
| 295 |
+
|
| 296 |
+
for user in self.user_ids[:2]: # Test first 2 users
|
| 297 |
+
try:
|
| 298 |
+
response = requests.get(
|
| 299 |
+
f"{self.base_url}/user-history/{user['id']}"
|
| 300 |
+
)
|
| 301 |
+
|
| 302 |
+
if response.status_code == 200:
|
| 303 |
+
result = response.json()
|
| 304 |
+
data = result["data"]
|
| 305 |
+
symptom_count = len(data.get("symptom_checks", []))
|
| 306 |
+
image_count = len(data.get("image_analyses", []))
|
| 307 |
+
details = (
|
| 308 |
+
f"{symptom_count} symptom checks, "
|
| 309 |
+
f"{image_count} image analyses"
|
| 310 |
+
)
|
| 311 |
+
self.print_result(
|
| 312 |
+
f"History: {user['name']}",
|
| 313 |
+
True,
|
| 314 |
+
details
|
| 315 |
+
)
|
| 316 |
+
else:
|
| 317 |
+
self.print_result(
|
| 318 |
+
f"History: {user['name']}",
|
| 319 |
+
False,
|
| 320 |
+
f"Status: {response.status_code}"
|
| 321 |
+
)
|
| 322 |
+
except Exception as e:
|
| 323 |
+
self.print_result(
|
| 324 |
+
f"History: {user['name']}",
|
| 325 |
+
False,
|
| 326 |
+
str(e)
|
| 327 |
+
)
|
| 328 |
+
|
| 329 |
+
def test_edge_cases(self):
|
| 330 |
+
"""Test edge cases and error handling"""
|
| 331 |
+
self.print_section("6. Edge Cases & Error Handling")
|
| 332 |
+
|
| 333 |
+
# Test invalid user ID
|
| 334 |
+
try:
|
| 335 |
+
response = requests.post(
|
| 336 |
+
f"{self.base_url}/symptom-check",
|
| 337 |
+
json={
|
| 338 |
+
"user_id": "invalid-user-id-12345",
|
| 339 |
+
"symptoms": "headache"
|
| 340 |
+
}
|
| 341 |
+
)
|
| 342 |
+
passed = response.status_code == 404
|
| 343 |
+
self.print_result(
|
| 344 |
+
"Invalid User ID",
|
| 345 |
+
passed,
|
| 346 |
+
"Correctly rejected" if passed else "Should return 404"
|
| 347 |
+
)
|
| 348 |
+
except Exception as e:
|
| 349 |
+
self.print_result("Invalid User ID", False, str(e))
|
| 350 |
+
|
| 351 |
+
# Test empty symptoms
|
| 352 |
+
if self.user_ids:
|
| 353 |
+
try:
|
| 354 |
+
response = requests.post(
|
| 355 |
+
f"{self.base_url}/symptom-check",
|
| 356 |
+
json={
|
| 357 |
+
"user_id": self.user_ids[0]["id"],
|
| 358 |
+
"symptoms": ""
|
| 359 |
+
}
|
| 360 |
+
)
|
| 361 |
+
result = response.json()
|
| 362 |
+
passed = response.status_code == 200
|
| 363 |
+
self.print_result(
|
| 364 |
+
"Empty Symptoms",
|
| 365 |
+
passed,
|
| 366 |
+
"Handled gracefully" if passed else "Should handle empty input"
|
| 367 |
+
)
|
| 368 |
+
except Exception as e:
|
| 369 |
+
self.print_result("Empty Symptoms", False, str(e))
|
| 370 |
+
|
| 371 |
+
def _create_test_images(self) -> List[tuple]:
|
| 372 |
+
"""Create simple test images"""
|
| 373 |
+
try:
|
| 374 |
+
from PIL import Image, ImageDraw
|
| 375 |
+
import numpy as np
|
| 376 |
+
|
| 377 |
+
os.makedirs("test_images", exist_ok=True)
|
| 378 |
+
|
| 379 |
+
images = []
|
| 380 |
+
|
| 381 |
+
# Create a simple test image
|
| 382 |
+
img = Image.new('RGB', (224, 224), color='lightpink')
|
| 383 |
+
draw = ImageDraw.Draw(img)
|
| 384 |
+
draw.ellipse([50, 50, 174, 174], fill='red', outline='darkred')
|
| 385 |
+
img.save("test_images/skin_rash.jpg")
|
| 386 |
+
images.append(("test_images/skin_rash.jpg", "skin"))
|
| 387 |
+
|
| 388 |
+
return images
|
| 389 |
+
except:
|
| 390 |
+
return []
|
| 391 |
+
|
| 392 |
+
def print_summary(self):
|
| 393 |
+
"""Print test summary"""
|
| 394 |
+
self.print_section("Test Summary")
|
| 395 |
+
|
| 396 |
+
total = len(self.test_results)
|
| 397 |
+
passed = sum(1 for _, result in self.test_results if result)
|
| 398 |
+
failed = total - passed
|
| 399 |
+
|
| 400 |
+
print(f"\nTotal Tests: {total}")
|
| 401 |
+
print(f"✅ Passed: {passed}")
|
| 402 |
+
print(f"❌ Failed: {failed}")
|
| 403 |
+
print(f"Success Rate: {(passed/total*100) if total > 0 else 0:.1f}%")
|
| 404 |
+
|
| 405 |
+
if failed > 0:
|
| 406 |
+
print("\n⚠️ Failed Tests:")
|
| 407 |
+
for name, result in self.test_results:
|
| 408 |
+
if not result:
|
| 409 |
+
print(f" - {name}")
|
| 410 |
+
|
| 411 |
+
print("\n" + "=" * 70)
|
| 412 |
+
|
| 413 |
+
def run_all_tests(self):
|
| 414 |
+
"""Run complete test suite"""
|
| 415 |
+
print("\n🧪 AI Health Diagnostics API - Comprehensive Test Suite")
|
| 416 |
+
print(f"🌐 Testing endpoint: {self.base_url}")
|
| 417 |
+
|
| 418 |
+
# Run tests in order
|
| 419 |
+
if not self.test_health_check():
|
| 420 |
+
print("\n❌ API is not running. Start server with:")
|
| 421 |
+
print(" uvicorn main:app --reload")
|
| 422 |
+
return
|
| 423 |
+
|
| 424 |
+
self.test_create_profiles()
|
| 425 |
+
self.test_symptom_analysis()
|
| 426 |
+
self.test_image_analysis()
|
| 427 |
+
self.test_user_history()
|
| 428 |
+
self.test_edge_cases()
|
| 429 |
+
|
| 430 |
+
# Print summary
|
| 431 |
+
self.print_summary()
|
| 432 |
+
|
| 433 |
+
|
| 434 |
+
def main():
|
| 435 |
+
"""Main test runner"""
|
| 436 |
+
import sys
|
| 437 |
+
|
| 438 |
+
base_url = "http://localhost:8000"
|
| 439 |
+
if len(sys.argv) > 1:
|
| 440 |
+
base_url = sys.argv[1]
|
| 441 |
+
|
| 442 |
+
tester = HealthAPITester(base_url)
|
| 443 |
+
tester.run_all_tests()
|
| 444 |
+
|
| 445 |
+
|
| 446 |
+
if __name__ == "__main__":
|
| 447 |
+
main()
|