OliverOnHF/balanced-accuracy

Balanced Accuracy Metrics for 🤗 Evaluate

A minimal, production-ready set of balanced accuracy metrics for imbalanced vision/NLP tasks, implemented as plain Python scripts that you can load with evaluate from a dataset-type repo on the Hugging Face Hub.

What this is

Three drop‑in metrics that focus on fair evaluation under class imbalance:

• balanced_accuracy.py — binary & multiclass balanced accuracy with options for sample_weight, threshold="auto" (Youden’s J), ignore_index, adjusted, class_mask, return_per_class, and support_per_class.
• balanced_accuracy_multilabel.py — multilabel balanced accuracy with average={"macro","weighted","micro"}, threshold="auto" (per label), sample_weight, class_mask, ignore_index, and support_per_label.
• balanced_topk_accuracy.py — balanced top‑k accuracy (macro top‑k recall across classes) with sample_weight, multiple k values, and class masking.

Why it’s useful

• Works without packaging: just download the script and load via evaluate.
• Designed for long‑tail / imbalanced setups; supports masking, weighting, and chance‑adjustment.
• Clear error messages and reason fields for edge cases.

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Requirements & Installation

Install the minimal dependencies (Python ≥3.9 recommended):

pip install --upgrade pip
pip install evaluate datasets huggingface_hub numpy

Windows note: You may see a symlink warning from huggingface_hub. It only affects caching and can be ignored. To silence it, set HF_HUB_DISABLE_SYMLINKS_WARNING=1 or enable Windows Developer Mode.

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Repository Layout

This project is intentionally lightweight—each metric is a single Python file living in a dataset‑type Hub repo:

balanced_accuracy.py
balanced_accuracy_multilabel.py
balanced_topk_accuracy.py
README.md

All three metrics are loadable from the Hub via hf_hub_download(...) + evaluate.load(local_path, module_type="metric") — no installation step required.

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Quickstart

0) Common helper

from huggingface_hub import hf_hub_download
import evaluate

REPO = "OliverOnHF/balanced-accuracy"   # dataset-type repo
REV  = "main"                           # or a specific commit hash for reproducibility

def load_metric_from_hf(filename):
    path = hf_hub_download(REPO, filename, repo_type="dataset", revision=REV)
    return evaluate.load(path, module_type="metric")

1) Binary & Multiclass — balanced_accuracy.py

m = load_metric_from_hf("balanced_accuracy.py")

# Binary (labels)
print(m.compute(references=[0,1,1,0], predictions=[0,1,0,0], task="binary"))
# → {'balanced_accuracy': 0.75}

# Binary (probabilities) + automatic threshold search (Youden’s J)
print(m.compute(references=[0,1,1,0],
                predictions=[0.2, 0.9, 0.1, 0.3],
                task="binary", threshold="auto"))
# → {'balanced_accuracy': 0.75, 'optimal_threshold': 0.6}

# Multiclass (macro BA) with per-class recall & sample_weight
print(m.compute(references=[0,1,2,1],
                predictions=[0,2,2,1],
                task="multiclass", num_classes=3,
                return_per_class=True,
                sample_weight=[1, 0.5, 1, 1]))
# → {'balanced_accuracy': 0.888888..., 'per_class_recall': [1.0, 0.6666..., 1.0], 'support_per_class': [1.0, 1.5, 1.0]}

# Class masking (e.g., tail classes only)
print(m.compute(references=[0,1,2,1], predictions=[0,2,2,1],
                task="multiclass", num_classes=3,
                class_mask=[1,2], return_per_class=True))

Key arguments

• task: "binary" or "multiclass" (default "binary")
• threshold: float in (0,1) or "auto" (binary probabilities only). If predictions are 0/1 labels, threshold is ignored.
• num_classes: for multiclass; inferred if not set (when labels are 0..K‑1).
• sample_weight: per‑sample weights; confusion counts become weighted sums.
• ignore_index: skip samples where reference == ignore_index.
• adjusted: chance‑corrected BA (2*BA-1 for binary; (BA-1/K)/(1-1/K) for multiclass).
• class_mask: compute macro‑BA over a subset of classes.
• return_per_class: also return per‑class recalls; support_per_class is count or weighted sum (if sample_weight is provided).

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2) Multilabel — balanced_accuracy_multilabel.py

m = load_metric_from_hf("balanced_accuracy_multilabel.py")

y_true = [[1,0,1],
          [0,1,0]]
y_pred = [[1,0,0],
          [0,1,1]]

# Labels (0/1)
print(m.compute(references=y_true, predictions=y_pred, return_per_label=True))
# → {'balanced_accuracy': 0.6666..., 'per_label_ba': [1.0, 1.0, 0.0], 'support_per_label': [1, 1, 1]}

# Probabilities + per-label automatic threshold
probs = [[0.9,0.2,0.1],
         [0.1,0.8,0.7]]
print(m.compute(references=y_true, predictions=probs,
                from_probas=True, threshold="auto"))
# → {'balanced_accuracy': 0.8333..., 'per_label_thresholds': [0.5, 0.5, ~0.7]}

# Weighted / micro / class_mask
print(m.compute(references=y_true, predictions=y_pred,
                average="micro",
                sample_weight=[1.0, 0.5],
                class_mask=[0,2]))

Key arguments

• from_probas: if True, predictions are probabilities in [0,1]; else must be 0/1 labels.
• threshold: float in (0,1) or "auto" (when from_probas=True; "auto" selects a threshold per label).
• average: "macro" | "weighted" | "micro"
  • macro: average BA across labels;
  • weighted: weighted by each label’s positive support;
  • micro: pool TP/TN/FP/FN across all labels then compute BA.
• class_mask: evaluate only the specified label indices.
• return_per_label: additionally return per_label_ba and support_per_label.

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3) Balanced Top‑K Accuracy — balanced_topk_accuracy.py

import numpy as np
m = load_metric_from_hf("balanced_topk_accuracy.py")

scores = np.array([[0.7,  0.2, 0.1],
                   [0.1,  0.3, 0.6],
                   [0.05, 0.05,0.9],
                   [0.05, 0.9, 0.05]])
y_true = [0,1,2,1]

# top-1 (macro recall across classes)
print(m.compute(references=y_true, predictions=scores, k=1, return_per_class=True))
# → {'balanced_topk_accuracy': 0.8333..., 'per_class_recall': [1.0, 0.5, 1.0]}

# multiple k at once
print(m.compute(references=y_true, predictions=scores, k_list=[1,2], return_per_class=True))
# → {'balanced_topk_accuracy': {1: 0.8333..., 2: 1.0}, 'per_class_recall': {1: [...], 2: [...]}}

# with sample_weight and class_mask
print(m.compute(references=y_true, predictions=scores, k=1,
                sample_weight=[1,0.5,1,1], class_mask=[0,1,2]))

Intuition: For each class c, compute recall@k among samples of class c, then macro‑average across classes (optionally over a masked subset).

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Expected Outputs (Sanity Check)

These should match what you get locally:

# Binary BA
{'balanced_accuracy': 0.75}

# Binary BA with auto threshold (probs: [0.2, 0.9, 0.1, 0.3])
{'balanced_accuracy': 0.75, 'optimal_threshold': 0.6}

# Multiclass BA with weights
{'balanced_accuracy': 0.888888..., 'per_class_recall': [1.0, 0.6666..., 1.0], 'support_per_class': [1.0, 1.5, 1.0]}

# Multilabel BA (labels)
{'balanced_accuracy': 0.6666..., 'per_label_ba': [1.0, 1.0, 0.0], 'support_per_label': [1, 1, 1]}

# Multilabel BA (probs + auto thresholds)
{'balanced_accuracy': 0.8333..., 'per_label_thresholds': [0.5, 0.5, ~0.7]}

# Balanced top-1 and top-2
{'balanced_topk_accuracy': 0.8333..., 'per_class_recall': [1.0, 0.5, 1.0]}
{'balanced_topk_accuracy': {1: 0.8333..., 2: 1.0}, 'per_class_recall': {1: [...], 2: [...]}}

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API Reference (TL;DR)

balanced_accuracy.py (binary/multiclass)

• Args:
  predictions, references, task={"binary","multiclass"}, num_classes=None,
  adjusted=False, zero_division=0.0, threshold=None|"auto" (binary prob),
  ignore_index=None, return_per_class=False, class_mask=None, sample_weight=None
• Returns:
  {"balanced_accuracy": float} + optional {"optimal_threshold": float} (binary, auto) +
  optional {"per_class_recall": list[float], "support_per_class": list[int|float]} (multiclass).

balanced_accuracy_multilabel.py

• Args:
  predictions, references, from_probas=False, threshold=0.5|"auto",
  zero_division=0.0, average="macro"|"weighted"|"micro", class_mask=None,
  ignore_index=None, return_per_label=False, sample_weight=None
• Returns:
  {"balanced_accuracy": float} + optional {"per_label_thresholds": list[float]} (auto) +
  optional {"per_label_ba": list[float], "support_per_label": list[int]}.

balanced_topk_accuracy.py

• Args:
  predictions (N,K), references (N), k=1 or k_list=[...], class_mask=None,
  sample_weight=None, zero_division=0.0, return_per_class=False
• Returns:
  {"balanced_topk_accuracy": float | dict[int,float]} + optional {"per_class_recall": ...}.

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Error Messages & Special Reasons

Friendly messages you may encounter by design:

• Length/shape: “Mismatch in the number of predictions …” / “Multilabel expects 2D arrays …”
• NaN/Inf: “predictions contains NaN/Inf.”
• Binary:
  • labels not in {0,1} → “For binary with label predictions, values must be 0/1.”
  • probs not in [0,1] → “For binary with probabilities, predictions must be in [0,1].”
• Multiclass: label out of range → “predictions/references must be in [0,K‑1] …”
• Multilabel: average invalid / prob or label value invalid / shape mismatch
• Top‑k: invalid k / label out of range
• Reasoned NaN:
  • {"reason": "empty_after_ignore_index"} — all samples were ignored
  • {"reason": "empty_class_mask_after_filtering"} — class/label mask removed everything

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Reproducible Smoke Test

Copy into test_all.py and run:

from huggingface_hub import hf_hub_download
import evaluate, numpy as np

REPO, REV = "OliverOnHF/balanced-accuracy", "main"
def load(fname): return evaluate.load(hf_hub_download(REPO, fname, repo_type="dataset", revision=REV), module_type="metric")

# 1) binary & multiclass
mba = load("balanced_accuracy.py")
print(mba.compute(references=[0,1,1,0], predictions=[0,1,0,0], task="binary"))
print(mba.compute(references=[0,1,1,0], predictions=[0.2,0.9,0.1,0.3], task="binary", threshold="auto"))
print(mba.compute(references=[0,1,2,1], predictions=[0,2,2,1], task="multiclass", num_classes=3, return_per_class=True, sample_weight=[1,0.5,1,1]))

# 2) multilabel
mml = load("balanced_accuracy_multilabel.py")
y_true = [[1,0,1],[0,1,0]]; y_pred = [[1,0,0],[0,1,1]]; probs = [[0.9,0.2,0.1],[0.1,0.8,0.7]]
print(mml.compute(references=y_true, predictions=y_pred, return_per_label=True))
print(mml.compute(references=y_true, predictions=probs, from_probas=True, threshold="auto"))

# 3) top-k
mtk = load("balanced_topk_accuracy.py")
scores = np.array([[0.7,0.2,0.1],[0.1,0.3,0.6],[0.05,0.05,0.9],[0.05,0.9,0.05]]); y_true = [0,1,2,1]
print(mtk.compute(references=y_true, predictions=scores, k=1, return_per_class=True))
print(mtk.compute(references=y_true, predictions=scores, k_list=[1,2], return_per_class=True))

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Tips

• Pin revision to a commit hash for exact reproducibility.
• support_per_class / support_per_label are counts when unweighted; if sample_weight is provided they become effective weight sums (floats).
• For extreme long‑tail distributions, combine class_mask with per‑class analysis for stable reporting.

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License

MIT (suggested). If you need a specific license, add a root LICENSE file.