AssistantAnswer stringlengths 80 810 | Entry stringlengths 6 10 | ThinkingText stringlengths 134 872 | UserInput stringlengths 29 171 | protein_family_stat dict |
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Here is a ABC transporter superfamily protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤTƤLƤLƤTƤVƤKƤHƤLƤTƤIƤTƤDƤTƤWƤTƤDƤQƤPƤLƤVƤSƤDƤVƤNƤFƤTƤLƤTƤKƤGƤEƤTƤLƤGƤVƤIƤGƤEƤSƤGƤSƤGƤKƤSƤIƤTƤCƤKƤSƤIƤIƤGƤLƤNƤPƤEƤRƤLƤGƤVƤTƤGƤEƤIƤIƤFƤDƤGƤTƤSƤMƤLƤSƤLƤSƤEƤSƤQƤRƤKƤKƤYƤRƤGƤKƤD... | A0A0H3JXA3 | The user wants a ABC transporter superfamily protein with comprehensive GO annotation coverage.
I should generate a protein with 271 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological processes iron ... | I would like a protein from ABC transporter superfamily. | {
"MotifSeq": null,
"avg_len": "250.9516129032258",
"max_len": "298.0",
"min_len": "199.0",
"representative": "MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFA... |
Here is a Virgaviridae capsid protein family protein that fits your request.
<protein>MƤSƤYƤTƤIƤAƤTƤPƤSƤQƤFƤVƤFƤLƤSƤSƤAƤWƤAƤDƤPƤIƤEƤLƤIƤNƤLƤCƤTƤNƤSƤLƤGƤNƤQƤFƤQƤTƤQƤQƤAƤRƤTƤTƤVƤQƤRƤQƤFƤSƤEƤVƤWƤKƤPƤVƤPƤQƤVƤTƤVƤRƤFƤPƤDƤSƤGƤFƤKƤVƤYƤRƤYƤNƤAƤVƤLƤDƤPƤLƤVƤTƤAƤLƤLƤGƤAƤFƤDƤTƤRƤNƤRƤIƤIƤEƤVƤEƤNƤQƤAƤNƤPƤTƤTƤAƤEƤTƤLƤDƤAƤTƤRƤRƤVƤDƤDƤ... | A0A0S2SZX3 | The user needs a Virgaviridae capsid protein family protein for experimental use.
This protein is should be 159 amino acids long, within the expected size range for Virgaviridae capsid protein family proteins.
The protein will be annotated with structural molecule activity. These MF terms provide direct mechanistic inf... | I would like a protein from Virgaviridae capsid protein family. | {
"MotifSeq": null,
"avg_len": "162.78048780487805",
"max_len": "207.0",
"min_len": "157.0",
"representative": "MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSSFESSSGLVWTSGPAT",
"stddev_len": "12.162467256116154"... |
Here is a Three-finger toxin family, Short-chain subfamily, Type IA cytotoxin sub-subfamily protein localized to the extracellular region, matching your spatial requirement.
<protein>VƤVƤTƤIƤVƤCƤLƤDƤLƤGƤYƤTƤLƤKƤCƤNƤKƤLƤVƤPƤLƤFƤYƤKƤTƤCƤPƤAƤGƤKƤNƤLƤCƤYƤKƤMƤYƤMƤVƤAƤTƤPƤKƤVƤPƤVƤKƤRƤGƤCƤIƤDƤVƤCƤPƤKƤSƤSƤLƤLƤVƤKƤYƤVƤCƤCƤNƤTƤD... | A0A0U5AUY6 | The user wants a Three-finger toxin family, Short-chain subfamily, Type IA cytotoxin sub-subfamily protein that operates specifically in the extracellular region.
The protein should be 72 amino acids long, appropriate for a Three-finger toxin family, Short-chain subfamily, Type IA cytotoxin sub-subfamily protein.
The p... | I want a Three-finger toxin family, Short-chain subfamily, Type IA cytotoxin sub-subfamily protein that is active in the extracellular region. | {
"MotifSeq": null,
"avg_len": "65.53488372093024",
"max_len": "82.0",
"min_len": "10.0",
"representative": "LKCNKLVPLFYKTCPAGKNLCYKMFMVSNKMVPVKRGCIDVCPKSSLLVKYVCCNTDRCN",
"stddev_len": "15.971075085857082"
} |
Here is a MIP/aquaporin (TC 1.A.8) family protein localized to the vacuolar membrane, matching your spatial requirement.
<protein>MƤDƤQƤFƤVƤFƤSƤGƤGƤSƤEƤGƤGƤGƤEƤLƤGƤGƤDƤRƤEƤRƤDƤSƤLƤTƤPƤEƤLƤGƤRƤFƤEƤHƤLƤIƤFƤNƤMƤQƤKƤYƤFƤCƤEƤFƤFƤAƤAƤLƤVƤIƤVƤSƤAƤVƤAƤFƤGƤLƤAƤKƤEƤGƤGƤAƤQƤAƤAƤPƤLƤSƤIƤTƤSƤTƤIƤFƤAƤLƤIƤTƤLƤFƤKƤDƤIƤSƤGƤAƤHƤFƤNƤPƤAƤ... | A0A125YZH9 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 263 amino acids long, an appropriate size for a MIP/aquaporin (TC 1.A.8) family protein operating in the vacuolar membrane.
The biological process annotations: water trans... | I want a MIP/aquaporin (TC 1.A.8) family protein that is active in the vacuolar membrane. | {
"MotifSeq": "NPA",
"avg_len": "238.5430463576159",
"max_len": "295.0",
"min_len": "79.0",
"representative": "MWELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFT... |
Here is a Eukaryotic ribosomal protein eL39 family protein localized to the cytosolic large ribosomal subunit, matching your spatial requirement.
<protein>MƤPƤSƤQƤKƤSƤFƤRƤTƤKƤQƤKƤLƤAƤKƤAƤQƤKƤQƤNƤRƤPƤLƤPƤQƤWƤIƤRƤLƤRƤTƤDƤNƤKƤIƤRƤYƤNƤAƤKƤRƤRƤHƤWƤRƤRƤTƤKƤLƤGƤI</protein> | A0A1D8PDT4 | The user wants a Eukaryotic ribosomal protein eL39 family protein that operates specifically in the cytosolic large ribosomal subunit.
The protein should be 51 amino acids long, appropriate for a Eukaryotic ribosomal protein eL39 family protein.
The protein is confirmed to localize to the cytosolic large ribosomal subu... | I want a Eukaryotic ribosomal protein eL39 family protein that is active in the cytosolic large ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "50.93975903614458",
"max_len": "52.0",
"min_len": "50.0",
"representative": "MARNKPFAKKLRLAKAAKQNRRVPVWVIVKTNRKVITHPKRRHWRRTKLKE",
"stddev_len": "0.393526817208783"
} |
Here is a Eukaryotic ribosomal protein eL36 family protein localized to the cytosolic large ribosomal subunit, matching your spatial requirement.
<protein>MƤAƤKƤSƤGƤIƤAƤAƤGƤVƤNƤKƤGƤRƤKƤTƤTƤAƤKƤEƤVƤAƤPƤKƤIƤSƤYƤRƤKƤGƤAƤSƤSƤQƤRƤTƤVƤFƤVƤRƤSƤIƤVƤKƤEƤVƤAƤGƤLƤAƤPƤYƤEƤRƤRƤLƤIƤEƤLƤIƤRƤNƤAƤGƤEƤKƤRƤAƤKƤKƤLƤAƤKƤKƤRƤLƤGƤTƤHƤKƤRƤAƤL... | A0A1D8PH21 | The user wants a Eukaryotic ribosomal protein eL36 family protein that operates specifically in the cytosolic large ribosomal subunit.
The protein should be 99 amino acids long, appropriate for a Eukaryotic ribosomal protein eL36 family protein.
The protein is confirmed to localize to the cytosolic large ribosomal subu... | I want a Eukaryotic ribosomal protein eL36 family protein that is active in the cytosolic large ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "104.45161290322581",
"max_len": "115.0",
"min_len": "94.0",
"representative": "MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD",
"stddev_len": "4.365308004997427"
} |
Here is a Peptidase S1 family, Snake venom subfamily protein localized to the extracellular region, matching your spatial requirement.
<protein>MƤVƤLƤIƤRƤVƤLƤAƤNƤLƤLƤVƤLƤQƤLƤSƤYƤAƤQƤKƤSƤSƤEƤLƤVƤIƤGƤGƤDƤEƤCƤNƤIƤNƤEƤHƤPƤFƤLƤVƤAƤLƤHƤTƤAƤRƤSƤKƤRƤFƤYƤCƤAƤGƤTƤLƤIƤNƤQƤEƤWƤVƤLƤTƤAƤAƤRƤCƤDƤRƤKƤNƤIƤRƤIƤIƤLƤGƤVƤHƤSƤKƤNƤVƤPƤNƤEƤDƤ... | A0A1I9KNP0 | The user wants a Peptidase S1 family, Snake venom subfamily protein that operates specifically in the extracellular region.
The protein should be 260 amino acids long, appropriate for a Peptidase S1 family, Snake venom subfamily protein.
The protein is confirmed to localize to the extracellular region.
The protein is a... | I want a Peptidase S1 family, Snake venom subfamily protein that is active in the extracellular region. | {
"MotifSeq": null,
"avg_len": "197.6600985221675",
"max_len": "285.0",
"min_len": "9.0",
"representative": "MVLIRVLANLLILQLSYAQRSSELVIGGDECNINEHRFLVALYKSGRFRCGGTLINQEWVLTAAHCDRRNMEIKLGMHSKNVPNEDEQRRVPKEKFFCDSNKNYTQWNKDIMLIRLNSPVNNSTHIAPLSLPSNPPIVGSVCRIMGWGTITSPNETYPDVPHCANINLFNYTVCHGAHAGLPATSRTLCAGVLEGGKDTCK... |
Here is a short ClpS family protein (162 amino acids) that meets your size requirement.
<protein>MƤAƤAƤSƤCƤLƤRƤPƤAƤPƤTƤAƤSƤAƤQƤMƤMƤTƤRƤSƤPƤVƤAƤGƤLƤPƤRƤPƤCƤSƤAƤLƤQƤRƤSƤGƤCƤTƤLƤQƤGƤAƤFƤGƤTƤFƤAƤPƤQƤTƤTƤRƤTƤFƤVƤVƤTƤWƤAƤKƤGƤGƤVƤMƤDƤAƤPƤTƤTƤTƤQƤQƤPƤAƤSƤGƤVƤEƤRƤSƤQƤKƤRƤPƤPƤIƤYƤKƤVƤLƤLƤHƤNƤDƤNƤYƤNƤKƤRƤEƤYƤVƤVƤKƤVƤLƤLƤKƤVƤVƤEƤQ... | A0A2K3CNL6 | The user is asking for a short ClpS family protein. Length is the primary filter here.
At 162 amino acids, this protein qualifies as short.
The biological process annotations cover protein catabolic process, proteolysis.
The protein should reside in the chloroplast stroma. | Give me a short ClpS family protein. | {
"MotifSeq": null,
"avg_len": "107.01067615658363",
"max_len": "169.0",
"min_len": "90.0",
"representative": "MGKTNDWLDFDQLAEDKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA",
"stddev_len": "8.28530712671755"
} |
Here is a Cerato-ulmin hydrophobin family protein localized to the extracellular region.
<protein>MƤPƤAƤSƤNƤSƤCƤSƤPƤPƤGƤGƤDƤHƤKƤPƤPƤPƤPƤPƤPƤSƤHƤPƤSƤPƤSƤPƤTƤPƤSƤYƤPƤPƤPƤPƤNƤNƤGƤGƤGƤYƤYƤPƤPƤPƤPƤDƤNƤTƤSƤHƤTƤPƤPƤPƤPƤSƤSƤTƤPƤPƤNƤNƤGƤGƤGƤGƤNƤDƤGƤGƤSƤGƤNƤTƤGƤGƤGƤNƤSƤDƤDƤGƤSƤDƤGƤGƤHƤSƤIƤCƤPƤSƤGƤLƤYƤSƤSƤAƤQƤCƤCƤSƤTƤDƤVƤLƤGƤIƤAƤ... | A0A2T3ZJ73 | The user is seeking Cerato-ulmin hydrophobin family protein.
The protein is 160 amino acids long.
The one available anchor is localization to the extracellular region. | I would like a Cerato-ulmin hydrophobin family protein. | {
"MotifSeq": null,
"avg_len": "109.76923076923077",
"max_len": "299.0",
"min_len": "86.0",
"representative": "MKFSLAAVALLGAVVSALPANEKRQAYIPCSGLYGTSQCCATDVLGVADLDCGNPPSSPTDADNFSAVCAEIGQRARCCVLPILDQGILCNTPTGVQD",
"stddev_len": "37.00246189424182"
} |
Here is a ATPase epsilon chain family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤTƤLƤNƤLƤCƤVƤLƤTƤPƤNƤRƤIƤVƤWƤDƤSƤEƤVƤKƤEƤIƤIƤLƤPƤTƤNƤSƤGƤQƤIƤGƤVƤLƤPƤNƤHƤAƤPƤIƤAƤTƤAƤVƤDƤIƤGƤIƤLƤRƤIƤRƤLƤNƤGƤQƤWƤLƤTƤMƤAƤLƤMƤGƤGƤFƤAƤKƤIƤGƤSƤNƤEƤIƤIƤVƤLƤVƤNƤDƤ... | A0A341 | The user is filtering for a protein within the ATPase epsilon chain family. The primary evidence axis here is molecular function.
The protein is 132 amino acids long.
The molecular function annotations are the key evidence: proton-transporting ATP synthase activity, rotational mechanism, ATP binding.
The protein must l... | I need a ATPase epsilon chain family protein. | {
"MotifSeq": null,
"avg_len": "135.6622340425532",
"max_len": "203.0",
"min_len": "11.0",
"representative": "MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM",
"stddev_len": "12.413868766239538"
} |
Here is a Conotoxin O1 superfamily protein that fits your request.
<protein>MƤKƤLƤTƤCƤMƤMƤIƤIƤAƤVƤLƤFƤLƤTƤAƤWƤTƤFƤAƤTƤAƤDƤDƤSƤGƤNƤGƤLƤEƤNƤLƤFƤSƤKƤAƤHƤHƤEƤMƤKƤNƤPƤEƤAƤSƤKƤLƤNƤKƤRƤCƤLƤAƤKƤGƤDƤFƤCƤNƤLƤIƤTƤQƤDƤCƤCƤDƤGƤIƤCƤFƤIƤFƤCƤP</protein> | A0A3G3C7S6 | The user is looking for a protein from the Conotoxin O1 superfamily.
The generated protein should have around 76 amino acids, which is within the expected size range for Conotoxin O1 superfamily proteins.
This family is usually annotated with toxin activity, ion channel inhibitor activity.
Subcellularly, the protein s... | I would like a Conotoxin O1 superfamily protein. | {
"MotifSeq": null,
"avg_len": "69.03237410071942",
"max_len": "97.0",
"min_len": "23.0",
"representative": "MKLTCVVIVAVLLLTACQLLTADDSRGTQKHRALRSDTKLSMSTRCKGKGAPCRKTMYDCCSGSCGRRGKCG",
"stddev_len": "17.483845935935516"
} |
Here is a AP2/ERF transcription factor family, ERF subfamily protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤDƤYƤSƤSƤRƤDƤDƤLƤLƤFƤHƤYƤNƤSƤLƤPƤFƤNƤVƤNƤDƤTƤQƤDƤMƤLƤLƤYƤNƤLƤVƤAƤEƤGƤSƤSƤQƤEƤTƤVƤNƤSƤSƤSƤSƤYƤGƤIƤKƤEƤEƤEƤVƤTƤSƤYƤEƤEƤEƤRƤKƤDƤKƤNƤYƤRƤGƤVƤRƤKƤRƤPƤWƤGƤ... | A0A3Q7I5Y9 | The user wants a AP2/ERF transcription factor family, ERF subfamily protein with comprehensive GO annotation coverage.
I should generate a protein with 193 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following bio... | I would like a protein from AP2/ERF transcription factor family, ERF subfamily. | {
"MotifSeq": "KKPAGRKKFRETR",
"avg_len": "218.53125",
"max_len": "300.0",
"min_len": "46.0",
"representative": "MNSFSAFSEMFGSDYESSVSSGGDYIPTLASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTDHGFDMEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEGMLLPLPSVQ... |
Sure! Here is a protein from the G protein gamma family that matches your request.
<protein>MƤSƤGƤFƤSƤSƤVƤAƤAƤTƤKƤKƤVƤVƤQƤQƤLƤQƤLƤEƤAƤGƤLƤNƤSƤVƤKƤVƤSƤQƤAƤAƤAƤDƤLƤKƤQƤFƤCƤLƤQƤNƤAƤQƤHƤDƤPƤLƤLƤTƤGƤVƤSƤSƤSƤTƤNƤPƤFƤRƤPƤQƤKƤVƤCƤSƤFƤL</protein> | A0A804HLA8 | The user is requesting a protein from the G protein gamma family. Let me reason through what I know about a suitable candidate.
The protein should be 68 amino acids long.
Looking at the biological process annotations, this protein is involved in G protein-coupled receptor signaling pathway.
On the molecular function si... | I would like a protein that is in the G protein gamma family. | {
"MotifSeq": null,
"avg_len": "74.23728813559322",
"max_len": "110.0",
"min_len": "62.0",
"representative": "MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL",
"stddev_len": "10.103497146432032"
} |
Sure! Here is a protein from the HisA/HisF family that matches your request.
<protein>MƤLƤTƤKƤRƤIƤIƤPƤCƤLƤDƤVƤTƤAƤGƤRƤVƤVƤKƤGƤVƤNƤFƤVƤSƤLƤTƤDƤVƤGƤDƤPƤVƤEƤIƤAƤKƤAƤYƤNƤEƤAƤGƤAƤDƤEƤLƤVƤFƤLƤDƤIƤTƤAƤTƤVƤEƤLƤRƤQƤTƤMƤIƤDƤVƤVƤEƤRƤTƤAƤEƤQƤVƤFƤIƤPƤLƤTƤVƤGƤGƤGƤIƤSƤSƤVƤAƤDƤMƤKƤEƤLƤLƤQƤAƤGƤAƤDƤKƤIƤSƤLƤNƤSƤAƤAƤIƤKƤRƤPƤEƤLƤIƤQƤEƤGƤAƤ... | A0AG15 | The user is requesting a protein from the HisA/HisF family. Let me reason through what I know about a suitable candidate.
The protein should be 251 amino acids long.
Looking at the biological process annotations, this protein is involved in L-histidine biosynthetic process.
On the molecular function side, the protein i... | I would like a protein that is in the HisA/HisF family. | {
"MotifSeq": null,
"avg_len": "250.82895783611775",
"max_len": "281.0",
"min_len": "212.0",
"representative": "MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRSVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAERFGSQCIVVAIDAKKVSAPGEAPRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISE... |
Here is a CodY family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤTƤLƤLƤEƤKƤTƤRƤKƤIƤNƤAƤMƤLƤQƤNƤAƤAƤGƤKƤTƤVƤNƤFƤKƤEƤMƤAƤDƤTƤLƤTƤDƤVƤIƤEƤAƤNƤTƤYƤIƤVƤSƤRƤKƤGƤKƤLƤLƤGƤYƤSƤEƤSƤLƤPƤIƤEƤNƤDƤRƤMƤKƤQƤMƤLƤTƤEƤRƤQƤFƤPƤEƤEƤYƤTƤQƤSƤLƤFƤNƤVƤGƤEƤTƤSƤSƤNƤ... | A0AI83 | The user is filtering for a protein within the CodY family. The primary evidence axis here is molecular function.
The protein is 259 amino acids long.
The molecular function annotations are the key evidence: transcription cis-regulatory region binding, DNA-binding transcription repressor activity, GTP binding.
The prot... | I need a CodY family protein. | {
"MotifSeq": null,
"avg_len": "258.8738738738739",
"max_len": "262.0",
"min_len": "250.0",
"representative": "MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLFNVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAEEIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEG... |
Here is a Methyltransferase superfamily, RNA methyltransferase RsmG family protein that fits your request.
<protein>MƤNƤPƤEƤQƤFƤKƤTƤAƤLƤAƤEƤKƤGƤIƤEƤLƤSƤAƤTƤQƤMƤKƤQƤFƤHƤDƤYƤFƤEƤMƤLƤVƤEƤWƤNƤEƤKƤMƤNƤLƤTƤAƤIƤTƤDƤEƤKƤEƤVƤYƤLƤKƤHƤFƤYƤDƤSƤIƤSƤAƤTƤFƤYƤVƤDƤFƤTƤSƤFƤDƤSƤIƤCƤDƤVƤGƤAƤGƤAƤGƤFƤPƤSƤIƤPƤIƤKƤIƤCƤFƤPƤHƤLƤKƤVƤSƤIƤVƤDƤSƤLƤ... | A0AMC5 | The user needs a Methyltransferase superfamily, RNA methyltransferase RsmG family protein for experimental use.
This protein is should be 238 amino acids long, within the expected size range for Methyltransferase superfamily, RNA methyltransferase RsmG family proteins.
The protein will be annotated with rRNA (guanine-N... | I would like a protein from Methyltransferase superfamily, RNA methyltransferase RsmG family. | {
"MotifSeq": null,
"avg_len": "221.5652818991098",
"max_len": "277.0",
"min_len": "137.0",
"representative": "MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHL... |
Here is a CDP-archaeol synthase family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤNƤIƤIƤVƤHƤSƤIƤWƤLƤMƤLƤPƤAƤYƤVƤPƤNƤNƤFƤAƤAƤLƤFƤGƤGƤGƤTƤPƤLƤDƤMƤGƤMƤSƤLƤPƤDƤGƤHƤRƤVƤFƤGƤNƤGƤKƤTƤIƤRƤGƤTƤIƤAƤGƤVƤAƤGƤGƤIƤIƤVƤGƤLƤLƤQƤNƤSƤIƤAƤGƤVƤFƤGƤLƤPƤSƤFƤGƤDƤGƤMƤEƤLƤFƤLƤ... | A0B8Y7 | The user is asking for a CDP-archaeol synthase family protein.
The protein should spans 178 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in glycerophospholipid biosynthetic process.
The protein carries annotations for CDP-2,3... | I would like a CDP-archaeol synthase family protein. | {
"MotifSeq": null,
"avg_len": "173.5",
"max_len": "204.0",
"min_len": "163.0",
"representative": "MSIAYDLLLSILIYLPAFVANGSGPFIKRGTPIDFGKNFVDGRRLFGDGKTFEGLIVALTFGTTVGVIISKFFTAEWTLISFLESLFAMIGDMIGAFIKRRLGIPRGGRVLGLDQLDFVLGASLILVLMRVNITWYQFLFICGLAFFLHQGTNYVAYLLKIKNVPW",
"stddev_len": "7.918809706629606"
} |
Here is a Universal ribosomal protein uS4 family protein localized to the small ribosomal subunit, matching your spatial requirement.
<protein>MƤGƤYƤPƤGƤKƤSƤHƤKƤTƤYƤDƤRƤPƤRƤKƤPƤWƤEƤAƤDƤRƤMƤAƤNƤEƤVƤEƤLƤIƤKƤTƤYƤGƤLƤRƤNƤKƤRƤEƤLƤWƤKƤAƤEƤSƤIƤLƤRƤKƤYƤRƤRƤVƤGƤRƤMƤLƤLƤAƤSƤKƤAƤRƤGƤEƤAƤRƤAƤDƤIƤEƤAƤAƤAƤVƤIƤNƤRƤLƤSƤRƤFƤGƤIƤLƤKƤDƤG... | A0B9L2 | The user wants a Universal ribosomal protein uS4 family protein that operates specifically in the small ribosomal subunit.
The protein should be 183 amino acids long, appropriate for a Universal ribosomal protein uS4 family protein.
The protein is confirmed to localize to the small ribosomal subunit.
The protein is ass... | I want a Universal ribosomal protein uS4 family protein that is active in the small ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "201.7742782152231",
"max_len": "300.0",
"min_len": "77.0",
"representative": "MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI... |
Here is a Universal ribosomal protein uL24 family protein localized to the large ribosomal subunit, matching your spatial requirement.
<protein>MƤVƤSƤKƤQƤPƤRƤKƤQƤRƤKƤAƤRƤFƤNƤAƤPƤLƤHƤMƤRƤQƤRƤFƤMƤHƤAƤMƤLƤSƤPƤEƤLƤRƤKƤEƤYƤKƤKƤRƤSƤAƤQƤVƤKƤKƤGƤDƤTƤVƤKƤVƤMƤRƤGƤDƤNƤAƤGƤVƤEƤGƤEƤVƤLƤSƤVƤDƤLƤKƤRƤCƤVƤIƤTƤVƤAƤGƤVƤSƤNƤFƤRƤAƤDƤGƤTƤEƤ... | A0B9V9 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 116 amino acids long, an appropriate size for a Universal ribosomal protein uL24 family protein operating in the large ribosomal subunit.
The biological process annotation... | I want a Universal ribosomal protein uL24 family protein that is active in the large ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "108.14142538975501",
"max_len": "297.0",
"min_len": "14.0",
"representative": "MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKEAPIHVSNVMILDPKTGEPTRVGFKVEDGKKVRIAKKSGELLDK",
"stddev_len": "21.720455631450136"
} |
Here is a Anamorsin family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤNƤLƤKƤIƤTƤIƤNƤQƤQƤAƤSƤIƤSƤDƤSƤLƤIƤIƤAƤNƤLƤNƤLƤIƤQƤFƤFƤRƤDƤNƤTƤFƤNƤKƤIƤEƤCƤDƤQƤLƤLƤTƤLƤKƤDƤAƤVƤQƤIƤSƤQƤIƤLƤKƤDƤQƤGƤVƤLƤIƤYƤEƤGƤEƤIƤNƤEƤSƤVƤIƤTƤYƤFƤQƤAƤSƤGƤLƤYƤNƤQƤGƤQƤGƤKƤFƤIƤKƤQƤVƤLƤQƤIƤKƤKƤLƤNƤIƤPƤQƤQƤEƤFƤNƤNƤC... | A0BV78 | The user wants a Anamorsin family protein that operates specifically in the cytoplasm.
The protein should be 250 amino acids long, appropriate for a Anamorsin family protein.
The protein is confirmed to localize to the cytoplasm.
The protein is associated with iron-sulfur cluster assembly.
The protein carries annotatio... | I want a Anamorsin family protein that is active in the cytoplasm. | {
"MotifSeq": "CSTC#CGNC",
"avg_len": "241.62121212121212",
"max_len": "300.0",
"min_len": "103.0",
"representative": "MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYANSSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSGFINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELIDEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEE... |
Sure! Here is a protein from the Universal ribosomal protein uS8 family that matches your request.
<protein>MƤTƤMƤTƤDƤPƤVƤAƤDƤMƤLƤTƤRƤLƤRƤNƤAƤNƤSƤAƤYƤHƤDƤTƤVƤTƤMƤPƤYƤSƤKƤLƤKƤAƤRƤVƤAƤDƤIƤLƤKƤAƤEƤGƤYƤIƤAƤSƤWƤKƤEƤEƤDƤAƤEƤVƤGƤKƤKƤLƤTƤLƤEƤLƤKƤFƤGƤPƤNƤRƤEƤRƤSƤIƤAƤGƤVƤRƤRƤIƤSƤKƤPƤGƤLƤRƤVƤYƤAƤKƤSƤTƤNƤLƤPƤHƤVƤLƤGƤGƤLƤGƤVƤAƤIƤLƤ... | A0JZ71 | The user wants a protein from the Universal ribosomal protein uS8 family.
This protein should have around 132 amino acids long, which is within the expected range for Universal ribosomal protein uS8 family members.
Proteins within this family are usually associated with translation.
The protein is annotated with struct... | I would like a protein that is in the Universal ribosomal protein uS8 family. | {
"MotifSeq": null,
"avg_len": "131.79941002949852",
"max_len": "176.0",
"min_len": "74.0",
"representative": "MVMTDPIADMLTRIRNANIARHETVEIPASNMKRAIAMIMLKEGFIKSVEEIDDGKGGILKLTLKYGPNKERVISGLKRISKPGLRVYARHDELPRVLGGLGIAIISTSKGIMTDKEARKAGVGGEVICYIW",
"stddev_len": "3.792226773751899"
} |
Here is a Universal ribosomal protein uL24 family protein localized to the ribosome, matching your spatial requirement.
<protein>MƤAƤKƤIƤKƤKƤGƤDƤLƤVƤQƤVƤIƤTƤGƤAƤKƤAƤEƤRƤGƤGƤDƤRƤGƤKƤQƤGƤKƤVƤLƤRƤVƤFƤPƤDƤTƤNƤRƤVƤLƤVƤEƤGƤIƤNƤRƤVƤTƤKƤHƤTƤKƤVƤGƤQƤSƤQƤRƤGƤTƤKƤTƤGƤGƤIƤEƤVƤVƤEƤAƤSƤIƤHƤIƤSƤNƤVƤAƤLƤVƤDƤPƤSƤTƤKƤKƤPƤTƤRƤVƤGƤFƤRƤTƤE... | A0JZ73 | The user wants a Universal ribosomal protein uL24 family protein that operates specifically in the ribosome.
The protein should be 119 amino acids long, appropriate for a Universal ribosomal protein uL24 family protein.
The protein is confirmed to localize to the ribosome.
The protein is associated with translation.
Th... | I want a Universal ribosomal protein uL24 family protein that is active in the ribosome. | {
"MotifSeq": null,
"avg_len": "108.14142538975501",
"max_len": "297.0",
"min_len": "14.0",
"representative": "MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKEAPIHVSNVMILDPKTGEPTRVGFKVEDGKKVRIAKKSGELLDK",
"stddev_len": "21.720455631450136"
} |
Sure! Here is a protein from the Universal ribosomal protein uL24 family that matches your request.
<protein>MƤNƤKƤIƤRƤKƤGƤDƤEƤVƤIƤVƤVƤTƤGƤKƤDƤKƤGƤKƤRƤGƤVƤVƤLƤAƤVƤGƤAƤEƤHƤVƤTƤVƤEƤGƤIƤNƤLƤVƤKƤKƤHƤVƤKƤPƤNƤPƤMƤKƤGƤTƤTƤGƤGƤVƤEƤAƤKƤTƤMƤPƤLƤHƤIƤSƤNƤVƤAƤLƤVƤDƤAƤNƤGƤKƤAƤSƤRƤVƤGƤIƤKƤVƤEƤEƤGƤKƤKƤVƤRƤFƤLƤKƤTƤTƤGƤAƤVƤLƤSƤA</protei... | A0K3N6 | The user wants a protein from the Universal ribosomal protein uL24 family.
This protein should have around 102 amino acids long, which is within the expected range for Universal ribosomal protein uL24 family members.
Proteins within this family are usually associated with translation.
The protein is annotated with rRNA... | I would like a protein that is in the Universal ribosomal protein uL24 family. | {
"MotifSeq": null,
"avg_len": "108.14142538975501",
"max_len": "297.0",
"min_len": "14.0",
"representative": "MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKEAPIHVSNVMILDPKTGEPTRVGFKVEDGKKVRIAKKSGELLDK",
"stddev_len": "21.720455631450136"
} |
Here is a PRA-PH family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤTƤQƤSƤTƤEƤDƤTƤLƤLƤRƤLƤAƤAƤVƤIƤDƤSƤRƤKƤGƤGƤDƤPƤDƤQƤSƤYƤVƤSƤRƤLƤFƤHƤKƤGƤDƤDƤAƤVƤLƤKƤKƤIƤGƤEƤEƤAƤTƤEƤVƤVƤLƤAƤAƤKƤDƤVƤRƤQƤGƤGƤAƤPƤSƤAƤLƤVƤGƤEƤVƤAƤDƤLƤWƤFƤHƤCƤLƤVƤMƤLƤSƤHƤFƤDƤLƤSƤPƤAƤDƤVƤIƤAƤEƤLƤEƤRƤRƤEƤGƤLƤSƤGƤIƤEƤEƤKƤ... | A0K3W0 | The user wants a PRA-PH family protein that operates specifically in the cytoplasm.
The protein should be 121 amino acids long, appropriate for a PRA-PH family protein.
The protein is confirmed to localize to the cytoplasm.
The protein is associated with L-histidine biosynthetic process.
The protein carries annotations... | I want a PRA-PH family protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "123.76764705882353",
"max_len": "281.0",
"min_len": "87.0",
"representative": "MSDILDRLAEILEARKQASPDASYVARLYAKGTDAILKKIGEEATETVMAAKDDQAEKIIYEVADLWFHTLVLLAHKGLKPADVLEELARREGLSGLTEKANRQGGST",
"stddev_len": "42.255112417561826"
} |
Here is a Bacterial ribosomal protein bL21 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤYƤAƤVƤIƤKƤTƤGƤGƤKƤQƤYƤKƤVƤAƤVƤGƤEƤKƤLƤKƤVƤEƤQƤIƤPƤAƤDƤIƤDƤAƤEƤIƤTƤLƤDƤQƤVƤLƤAƤVƤGƤEƤGƤEƤSƤIƤKƤFƤGƤTƤPƤLƤVƤSƤGƤAƤSƤVƤKƤAƤTƤVƤVƤSƤHƤGƤRƤHƤAƤKƤVƤTƤIƤFƤKƤMƤRƤRƤRƤK... | A0K4A8 | The user is asking for a Bacterial ribosomal protein bL21 family protein.
The protein should spans 103 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in translation.
The protein carries annotations for rRNA binding, structural ... | I would like a Bacterial ribosomal protein bL21 family protein. | {
"MotifSeq": null,
"avg_len": "109.0374677002584",
"max_len": "270.0",
"min_len": "31.0",
"representative": "MSYAVIVTGGKQYKVAEGEFLKIEKLEVATGESVTFDRVLLVANGEEVTIGAPVVAGAKVVAEVVSQGRHDKVRIIKFRRRKHHMKRMGHRQWFTEIKITGIQA",
"stddev_len": "19.968018201322522"
} |
Sure! Here is a protein from the Thymidylate kinase family that matches your request.
<protein>MƤAƤSƤGƤKƤFƤIƤTƤFƤEƤGƤIƤDƤGƤAƤGƤKƤTƤTƤHƤLƤQƤWƤFƤCƤEƤRƤLƤQƤGƤRƤLƤAƤAƤAƤGƤRƤQƤVƤVƤVƤTƤRƤEƤPƤGƤGƤTƤQƤLƤGƤEƤKƤLƤRƤEƤIƤLƤLƤNƤQƤPƤMƤDƤLƤEƤTƤEƤAƤLƤLƤMƤFƤAƤAƤRƤRƤEƤHƤLƤAƤLƤVƤIƤEƤPƤAƤLƤAƤRƤGƤDƤWƤVƤVƤSƤDƤRƤFƤTƤDƤAƤTƤFƤAƤYƤQƤGƤGƤGƤRƤGƤL... | A0K817 | The user is requesting a protein from the Thymidylate kinase family. Let me reason through what I know about a suitable candidate.
The protein should be 206 amino acids long.
Looking at the biological process annotations, this protein is involved in dTDP biosynthetic process, dTTP biosynthetic process, dUDP biosyntheti... | I would like a protein that is in the Thymidylate kinase family. | {
"MotifSeq": null,
"avg_len": "209.7411003236246",
"max_len": "263.0",
"min_len": "156.0",
"representative": "MTGLFITLEGPEGAGKSTNREYLAERLRAAGIEVVLTREPGGTPLAERIREVLLAPVDEVMNPDTELLLVFAARAQHLAEVIRPALARGAVVLCDRFTDSTYAYQGGGRGLSLERIAALETFVQGDLRPDLTLIFDLPVEIGLARASARGRLDRFELEGREFFEAVRNAFLKRAEDDPARYVRIDAGQPLVKVQQSLDT... |
Sure! Here is a protein from the Adenylate kinase family that matches your request.
<protein>MƤRƤLƤIƤLƤLƤGƤAƤPƤGƤAƤGƤKƤGƤTƤQƤAƤNƤFƤIƤKƤEƤKƤFƤGƤIƤPƤQƤIƤSƤTƤGƤDƤMƤLƤRƤAƤAƤVƤKƤAƤGƤTƤPƤLƤGƤVƤEƤAƤKƤGƤYƤMƤDƤAƤGƤKƤLƤVƤPƤDƤAƤLƤIƤIƤGƤLƤVƤKƤEƤRƤLƤKƤEƤSƤDƤCƤAƤNƤGƤYƤLƤFƤDƤGƤFƤPƤRƤTƤIƤAƤQƤAƤDƤAƤMƤKƤEƤAƤGƤVƤAƤIƤDƤYƤVƤLƤEƤIƤDƤVƤPƤFƤS... | A0K9X1 | The user wants a protein from the Adenylate kinase family.
This protein should have around 220 amino acids long, which is within the expected range for Adenylate kinase family members.
Proteins within this family are usually associated with AMP salvage.
The protein is annotated with AMP kinase activity, ATP binding.
Th... | I would like a protein that is in the Adenylate kinase family. | {
"MotifSeq": null,
"avg_len": "210.255751014885",
"max_len": "299.0",
"min_len": "36.0",
"representative": "MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP... |
Sure! Here is a protein from the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily, EngB GTPase family that matches your request.
<protein>MƤDƤTƤQƤTƤLƤNƤFƤNƤKƤVƤHƤFƤVƤTƤSƤAƤPƤDƤIƤRƤHƤLƤPƤNƤDƤGƤGƤVƤEƤIƤAƤFƤAƤGƤRƤSƤNƤAƤGƤKƤSƤSƤAƤLƤNƤTƤLƤTƤKƤHƤKƤNƤLƤAƤRƤTƤSƤKƤTƤPƤGƤRƤTƤQƤLƤIƤNƤLƤFƤEƤLƤEƤPƤGƤKƤRƤLƤVƤDƤLƤPƤGƤYƤ... | A0KEY0 | The user is requesting a protein from the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily, EngB GTPase family. Let me reason through what I know about a suitable candidate.
The protein should be 216 amino acids long.
Looking at the biological process annotations, this protein is involved in division sept... | I would like a protein that is in the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily, EngB GTPase family. | {
"MotifSeq": null,
"avg_len": "207.76965265082268",
"max_len": "300.0",
"min_len": "181.0",
"representative": "MEINTHNAEILLSAANKSHYPQDDIPEIALAGRSNVGKSSFINTLLNRKNLARTSGKPGKTQLLNFFNIDDKLRFVDVPGYGYARVSKKEREKWGRMIEEYLTSRENLRAVVSLVDLRHDPSADDVQMYEFLKYYDIPVILVATKADKIPRGKWNKHESAIKKKLDFDKNDDFILFSSVTKDGLDAAWDAILSKI",
... |
Here is a Universal ribosomal protein uS11 family protein localized to the ribosome, matching your spatial requirement.
<protein>MƤAƤKƤTƤPƤTƤRƤAƤRƤKƤRƤVƤKƤKƤQƤVƤSƤDƤGƤIƤAƤHƤVƤHƤAƤSƤFƤNƤNƤTƤIƤVƤTƤIƤTƤDƤRƤQƤGƤNƤAƤLƤSƤWƤAƤTƤSƤGƤGƤSƤGƤFƤRƤGƤSƤRƤKƤSƤTƤPƤFƤAƤAƤQƤVƤAƤAƤEƤRƤAƤGƤEƤIƤAƤKƤEƤYƤGƤVƤKƤNƤLƤEƤVƤMƤVƤKƤGƤPƤGƤPƤGƤRƤEƤSƤS... | A0KF43 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 129 amino acids long, an appropriate size for a Universal ribosomal protein uS11 family protein operating in the ribosome.
The biological process annotations: translation.... | I want a Universal ribosomal protein uS11 family protein that is active in the ribosome. | {
"MotifSeq": null,
"avg_len": "131.75879396984925",
"max_len": "217.0",
"min_len": "66.0",
"representative": "MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVTITDVHGNAISWSSAGALGFKGSRKSTPFAAQMAAEAAAKASMEHGMKTVEVNVKGPGAGREAAIRALQAAGLEITAIKDVTPVPHNGCRPPKRRRV",
"stddev_len": "7.831096152805861"
} |
Here is a Universal ribosomal protein uS4 family protein localized to the small ribosomal subunit, matching your spatial requirement.
<protein>MƤAƤRƤYƤIƤGƤPƤKƤLƤKƤLƤSƤRƤRƤEƤGƤTƤDƤLƤFƤLƤKƤSƤGƤVƤRƤAƤIƤDƤSƤKƤCƤKƤIƤDƤTƤVƤPƤGƤQƤHƤGƤAƤRƤKƤAƤRƤLƤSƤDƤYƤGƤVƤQƤLƤRƤEƤKƤQƤKƤVƤRƤRƤIƤYƤGƤVƤLƤEƤKƤQƤFƤRƤNƤYƤYƤRƤDƤAƤAƤRƤQƤKƤGƤNƤTƤGƤEƤN... | A0KF44 | The user wants a Universal ribosomal protein uS4 family protein that operates specifically in the small ribosomal subunit.
The protein should be 206 amino acids long, appropriate for a Universal ribosomal protein uS4 family protein.
The protein is confirmed to localize to the small ribosomal subunit.
The protein is ass... | I want a Universal ribosomal protein uS4 family protein that is active in the small ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "201.7742782152231",
"max_len": "300.0",
"min_len": "77.0",
"representative": "MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI... |
Sure! Here is a protein from the RimM family that matches your request.
<protein>MƤEƤKƤPƤVƤVƤLƤGƤTƤLƤGƤTƤVƤYƤGƤIƤKƤGƤWƤLƤKƤVƤNƤSƤFƤTƤDƤVƤAƤEƤAƤIƤFƤDƤYƤNƤPƤWƤLƤIƤNƤQƤNƤGƤVƤWƤRƤEƤIƤQƤVƤSƤSƤWƤKƤRƤHƤNƤKƤGƤLƤIƤCƤKƤLƤDƤGƤIƤDƤVƤRƤEƤDƤAƤLƤAƤLƤTƤNƤVƤEƤIƤGƤVƤAƤAƤDƤLƤLƤPƤAƤLƤPƤEƤGƤEƤFƤYƤWƤRƤDƤLƤIƤGƤCƤSƤVƤVƤTƤTƤKƤGƤYƤDƤLƤGƤKƤVƤTƤE... | A0KG24 | The user wants a protein from the RimM family.
This protein should have around 173 amino acids long, which is within the expected range for RimM family members.
Proteins within this family are usually associated with ribosomal small subunit biogenesis, rRNA processing.
The protein is annotated with ribosome binding.
Th... | I would like a protein that is in the RimM family. | {
"MotifSeq": null,
"avg_len": "179.0210843373494",
"max_len": "248.0",
"min_len": "157.0",
"representative": "MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPGF",
"stddev_len"... |
Sure! Here is a protein from the Peptidase M48B family that matches your request.
<protein>MƤKƤRƤIƤMƤLƤFƤLƤVƤTƤNƤLƤAƤVƤMƤLƤVƤLƤGƤVƤVƤLƤNƤIƤLƤFƤSƤVƤLƤGƤIƤNƤKƤSƤSƤIƤSƤGƤLƤLƤVƤFƤCƤAƤVƤFƤGƤFƤGƤGƤSƤFƤIƤSƤLƤLƤMƤSƤKƤWƤMƤAƤKƤRƤSƤYƤGƤVƤQƤVƤIƤEƤQƤPƤRƤNƤEƤTƤEƤHƤWƤLƤVƤSƤTƤVƤAƤRƤQƤAƤRƤEƤAƤGƤIƤKƤMƤPƤEƤVƤGƤIƤYƤDƤSƤPƤEƤMƤNƤAƤFƤAƤTƤGƤA... | A0KID0 | The user wants a protein from the Peptidase M48B family.
This protein should have around 290 amino acids long, which is within the expected range for Peptidase M48B family members.
Proteins within this family are usually associated with proteolysis.
The protein is annotated with zinc ion binding, metalloendopeptidase a... | I would like a protein that is in the Peptidase M48B family. | {
"MotifSeq": null,
"avg_len": "290.8698224852071",
"max_len": "300.0",
"min_len": "252.0",
"representative": "MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGFGGSFISLLMSKWMALKSVGGEVIEQPRNERERWLMNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRIIAQIAAGFLGGNRDEGEGSNGNPLIYFAVA... |
Here is a ATP phosphoribosyltransferase family, Long subfamily protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤEƤTƤQƤRƤLƤRƤIƤAƤMƤQƤKƤSƤGƤRƤLƤSƤQƤDƤSƤQƤAƤLƤFƤKƤSƤCƤGƤLƤKƤIƤNƤLƤRƤEƤQƤRƤLƤIƤAƤHƤVƤEƤNƤMƤPƤIƤDƤIƤLƤRƤVƤRƤDƤDƤDƤIƤPƤGƤLƤVƤMƤEƤGƤVƤVƤDƤLƤGƤIƤIƤGƤEƤNƤ... | A0KKB9 | The user is asking for a ATP phosphoribosyltransferase family, Long subfamily protein.
The protein should spans 298 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in L-histidine biosynthetic process.
The protein carries annotat... | I would like a ATP phosphoribosyltransferase family, Long subfamily protein. | {
"MotifSeq": null,
"avg_len": "291.9490740740741",
"max_len": "299.0",
"min_len": "100.0",
"representative": "MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRD... |
Here is a KdsB family protein localized to the cytosol, matching your spatial requirement.
<protein>MƤSƤFƤVƤVƤVƤIƤPƤAƤRƤYƤAƤSƤTƤRƤLƤPƤGƤKƤPƤLƤAƤDƤIƤHƤGƤKƤPƤMƤVƤQƤHƤVƤVƤEƤKƤAƤLƤQƤSƤGƤAƤDƤRƤVƤIƤVƤAƤTƤDƤDƤEƤRƤVƤQƤQƤAƤLƤAƤAƤCƤAƤGƤQƤAƤGƤFƤEƤVƤCƤMƤTƤSƤKƤDƤHƤQƤSƤGƤTƤEƤRƤLƤAƤEƤVƤCƤRƤHƤYƤGƤFƤAƤAƤDƤTƤIƤVƤVƤNƤVƤQƤGƤDƤEƤPƤLƤIƤPƤPƤ... | A0KLX9 | The user wants a KdsB family protein that operates specifically in the cytosol.
The protein should be 253 amino acids long, appropriate for a KdsB family protein.
The protein is confirmed to localize to the cytosol.
The protein is associated with lipopolysaccharide biosynthetic process, CMP-keto-3-deoxy-D-manno-octulos... | I want a KdsB family protein that is active in the cytosol. | {
"MotifSeq": null,
"avg_len": "251.6766917293233",
"max_len": "298.0",
"min_len": "72.0",
"representative": "MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWERDRFAKGLETVGDNFLRHLGIYGYRAGFIRRYVTWQP... |
Here is a DapB family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤGƤGƤQƤVƤRƤVƤAƤIƤVƤGƤAƤGƤGƤRƤMƤGƤRƤTƤLƤIƤEƤSƤAƤYƤHƤQƤEƤHƤIƤRƤLƤGƤAƤAƤIƤEƤRƤPƤGƤSƤSƤLƤVƤGƤVƤDƤAƤGƤEƤLƤVƤGƤVƤGƤKƤLƤNƤVƤIƤIƤMƤDƤSƤLƤDƤYƤAƤTƤDƤDƤFƤDƤVƤLƤIƤDƤFƤTƤAƤPƤEƤAƤSƤIƤVƤHƤLƤ... | A0KTT2 | The user is filtering for a protein within the DapB family. The primary evidence axis here is molecular function.
The protein is 270 amino acids long.
The molecular function annotations are the key evidence: 4-hydroxy-tetrahydrodipicolinate reductase activity, NAD binding, NADP binding.
The protein must localizes to th... | I need a DapB family protein. | {
"MotifSeq": null,
"avg_len": "261.72370766488416",
"max_len": "298.0",
"min_len": "185.0",
"representative": "MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYT... |
Here is a ATP phosphoribosyltransferase family, Long subfamily protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤTƤEƤSƤNƤRƤLƤRƤIƤAƤIƤQƤKƤSƤGƤRƤLƤSƤTƤDƤSƤQƤQƤLƤLƤKƤSƤCƤGƤIƤKƤFƤSƤIƤNƤEƤQƤRƤLƤIƤAƤHƤAƤDƤNƤMƤPƤIƤDƤLƤLƤRƤVƤRƤDƤDƤDƤIƤPƤGƤLƤVƤMƤDƤGƤVƤVƤDƤLƤGƤIƤIƤGƤEƤNƤVƤLƤEƤEƤEƤQƤIƤEƤRƤQƤTƤLƤNƤK... | A0KWB6 | The user wants a ATP phosphoribosyltransferase family, Long subfamily protein that operates specifically in the cytoplasm.
The protein should be 299 amino acids long, appropriate for a ATP phosphoribosyltransferase family, Long subfamily protein.
The protein is confirmed to localize to the cytoplasm.
The protein is ass... | I want a ATP phosphoribosyltransferase family, Long subfamily protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "291.9490740740741",
"max_len": "299.0",
"min_len": "100.0",
"representative": "MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRD... |
Sure! Here is a protein from the Peptidase M48B family that matches your request.
<protein>MƤKƤRƤIƤFƤLƤLƤIƤAƤTƤNƤLƤAƤVƤLƤLƤVƤAƤSƤIƤVƤMƤSƤIƤLƤGƤVƤNƤTƤSƤTƤMƤGƤGƤLƤLƤVƤFƤAƤAƤIƤFƤGƤFƤGƤGƤAƤFƤIƤSƤLƤAƤIƤSƤKƤWƤMƤAƤKƤKƤTƤMƤGƤCƤEƤVƤIƤTƤTƤPƤRƤDƤSƤTƤEƤRƤWƤLƤLƤDƤTƤVƤAƤRƤQƤAƤQƤQƤAƤGƤIƤKƤMƤPƤEƤVƤAƤIƤYƤQƤSƤPƤEƤMƤNƤAƤFƤAƤTƤGƤPƤSƤKƤDƤN... | A0KY72 | The user wants a protein from the Peptidase M48B family.
This protein should have around 287 amino acids long, which is within the expected range for Peptidase M48B family members.
Proteins within this family are usually associated with proteolysis.
The protein is annotated with zinc ion binding, metalloendopeptidase a... | I would like a protein that is in the Peptidase M48B family. | {
"MotifSeq": null,
"avg_len": "290.8698224852071",
"max_len": "300.0",
"min_len": "252.0",
"representative": "MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGFGGSFISLLMSKWMALKSVGGEVIEQPRNERERWLMNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRIIAQIAAGFLGGNRDEGEGSNGNPLIYFAVA... |
Here is a RNase HII family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤAƤVƤFƤKƤTƤLƤTƤDƤAƤDƤIƤAƤTƤFƤSƤTƤGƤLƤVƤAƤGƤVƤDƤEƤVƤGƤRƤGƤPƤLƤVƤGƤDƤVƤVƤTƤAƤAƤVƤIƤLƤDƤPƤNƤRƤPƤIƤAƤGƤLƤNƤDƤSƤKƤKƤLƤSƤEƤKƤRƤRƤEƤAƤLƤFƤDƤEƤIƤCƤEƤKƤAƤLƤSƤYƤHƤVƤGƤRƤAƤSƤPƤLƤEƤIƤDƤEƤLƤNƤIƤLƤ... | A0KZ09 | The user is asking for a RNase HII family protein.
The protein should spans 209 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in DNA replication, removal of RNA primer, mismatch repair.
The protein carries annotations for mang... | I would like a RNase HII family protein. | {
"MotifSeq": null,
"avg_len": "221.54002911208153",
"max_len": "298.0",
"min_len": "181.0",
"representative": "MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPVKRALGLAS... |
Here is a Bacterial ribosomal protein bL28 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤSƤRƤVƤCƤQƤVƤTƤGƤKƤKƤPƤMƤVƤGƤNƤNƤRƤSƤHƤAƤKƤNƤAƤTƤRƤRƤRƤFƤLƤPƤNƤLƤQƤNƤHƤRƤFƤWƤLƤEƤEƤEƤKƤRƤFƤVƤQƤLƤRƤVƤSƤTƤKƤGƤIƤRƤLƤIƤDƤKƤKƤGƤIƤEƤVƤVƤVƤAƤEƤLƤRƤAƤRƤGƤEƤKƤV</prot... | A0L1R8 | The user is asking for a Bacterial ribosomal protein bL28 family protein.
The protein should spans 78 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in translation.
The protein carries annotations for structural constituent of ... | I would like a Bacterial ribosomal protein bL28 family protein. | {
"MotifSeq": null,
"avg_len": "77.6258234519104",
"max_len": "274.0",
"min_len": "61.0",
"representative": "MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV",
"stddev_len": "20.78060206007863"
} |
Here is a ATPase A chain family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤAƤAƤPƤGƤEƤAƤLƤTƤPƤQƤGƤYƤIƤQƤHƤHƤLƤTƤNƤLƤHƤVƤGƤEƤGƤFƤWƤTƤWƤHƤIƤDƤSƤLƤFƤFƤSƤVƤGƤLƤGƤVƤLƤFƤLƤWƤIƤFƤRƤSƤVƤGƤKƤKƤAƤTƤSƤGƤVƤPƤGƤKƤLƤQƤCƤFƤIƤEƤMƤIƤVƤEƤFƤVƤDƤNƤSƤVƤKƤEƤSƤFƤHƤGƤRƤNƤAƤLƤI... | A0L2T4 | The user wants a ATPase A chain family protein with comprehensive GO annotation coverage.
I should generate a protein with 264 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological processes proton moti... | I would like a protein from ATPase A chain family. | {
"MotifSeq": null,
"avg_len": "247.47425474254743",
"max_len": "297.0",
"min_len": "14.0",
"representative": "MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINIDSMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVS... |
Sure! Here is a protein from the SAICAR synthetase family that matches your request.
<protein>MƤQƤKƤGƤEƤKƤLƤYƤEƤGƤKƤAƤKƤVƤLƤFƤAƤTƤDƤDƤPƤNƤMƤLƤIƤQƤYƤFƤKƤDƤDƤAƤTƤAƤFƤNƤGƤIƤKƤKƤGƤTƤIƤAƤDƤKƤGƤVƤVƤNƤSƤLƤIƤSƤTƤRƤIƤYƤHƤIƤLƤEƤKƤVƤGƤIƤPƤTƤHƤLƤEƤEƤLƤLƤSƤPƤRƤEƤQƤLƤVƤHƤKƤVƤEƤIƤLƤPƤIƤEƤVƤVƤIƤRƤNƤRƤVƤAƤGƤSƤLƤAƤRƤRƤLƤGƤIƤEƤEƤGƤTƤEƤLƤ... | A0L4X9 | The user is requesting a protein from the SAICAR synthetase family. Let me reason through what I know about a suitable candidate.
The protein should be 242 amino acids long.
Looking at the biological process annotations, this protein is involved in 'de novo' IMP biosynthetic process, cobalamin biosynthetic process.
On ... | I would like a protein that is in the SAICAR synthetase family. | {
"MotifSeq": null,
"avg_len": "248.90401785714286",
"max_len": "300.0",
"min_len": "216.0",
"representative": "MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGS... |
Here is a Bacterial ribosomal protein bL32 family protein localized to the large ribosomal subunit, matching your spatial requirement.
<protein>MƤAƤVƤPƤKƤKƤKƤSƤSƤKƤSƤKƤGƤRƤSƤRƤAƤAƤHƤHƤAƤIƤKƤAƤPƤNƤLƤTƤSƤCƤSƤNƤCƤQƤEƤPƤMƤMƤPƤHƤRƤVƤCƤPƤKƤCƤGƤWƤYƤDƤGƤRƤEƤVƤVƤSƤMƤEƤE</protein> | A0L859 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 59 amino acids long, an appropriate size for a Bacterial ribosomal protein bL32 family protein operating in the large ribosomal subunit.
The biological process annotations... | I want a Bacterial ribosomal protein bL32 family protein that is active in the large ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "59.89903846153846",
"max_len": "195.0",
"min_len": "22.0",
"representative": "MAVPKRKTSPSKRGMRRSADALKAPTYVEDKNSGELRRPHHVDLKTGMYRGRQVLEPKEA",
"stddev_len": "12.09725527197165"
} |
Sure! Here is a protein from the PRA-PH family that matches your request.
<protein>MƤNƤNƤLƤSƤPƤPƤSƤTƤVƤDƤIƤLƤEƤQƤVƤYƤQƤVƤIƤQƤQƤRƤKƤSƤAƤPƤDƤPƤEƤAƤSƤYƤVƤAƤKƤLƤFƤHƤKƤGƤDƤDƤAƤIƤLƤKƤKƤVƤGƤEƤEƤAƤTƤEƤLƤVƤLƤAƤIƤKƤGƤRƤAƤAƤRƤNƤEƤVƤAƤHƤEƤAƤAƤDƤLƤIƤFƤHƤTƤLƤVƤGƤLƤAƤIƤMƤNƤIƤPƤPƤTƤEƤVƤMƤNƤVƤLƤSƤSƤRƤFƤGƤKƤTƤGƤLƤTƤRƤNƤQƤTƤPƤSƤVƤEƤLƤEƤP... | A0LCF5 | The user is requesting a protein from the PRA-PH family. Let me reason through what I know about a suitable candidate.
The protein should be 252 amino acids long.
Looking at the biological process annotations, this protein is involved in L-histidine biosynthetic process.
On the molecular function side, the protein is a... | I would like a protein that is in the PRA-PH family. | {
"MotifSeq": null,
"avg_len": "123.76764705882353",
"max_len": "281.0",
"min_len": "87.0",
"representative": "MSDILDRLAEILEARKQASPDASYVARLYAKGTDAILKKIGEEATETVMAAKDDQAEKIIYEVADLWFHTLVLLAHKGLKPADVLEELARREGLSGLTEKANRQGGST",
"stddev_len": "42.255112417561826"
} |
Here is a Peptidase S14 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤSƤLƤVƤPƤMƤVƤVƤEƤTƤTƤNƤRƤGƤEƤRƤAƤYƤDƤIƤYƤSƤRƤLƤLƤKƤEƤRƤVƤVƤFƤLƤVƤGƤQƤVƤEƤEƤHƤMƤAƤNƤLƤVƤVƤAƤQƤLƤLƤFƤLƤEƤSƤEƤNƤPƤEƤKƤDƤIƤHƤLƤYƤIƤNƤSƤPƤGƤGƤSƤVƤTƤAƤGƤMƤAƤIƤYƤDƤTƤMƤQƤFƤIƤRƤPƤSƤVƤSƤTƤ... | A0LDT4 | The user is asking for a Peptidase S14 family protein.
The protein should spans 202 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in protein quality control for misfolded or incompletely synthesized proteins.
The protein carri... | I would like a Peptidase S14 family protein. | {
"MotifSeq": null,
"avg_len": "203.7407894736842",
"max_len": "298.0",
"min_len": "22.0",
"representative": "MALVPMVVEQTSRGERSYDIFSRLLKERIIFMTGQVEDHMANLIVAQMMFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLAAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVIERDTERDRFLSAPEAVDYGLVDSVLSQRT",
"... |
Sure! Here is a protein from the HisA/HisF family that matches your request.
<protein>MƤIƤIƤFƤPƤAƤIƤDƤIƤKƤDƤGƤVƤCƤVƤRƤLƤMƤQƤGƤDƤPƤDƤRƤVƤTƤVƤYƤGƤKƤDƤPƤVƤSƤVƤAƤKƤRƤWƤEƤGƤEƤGƤAƤGƤWƤLƤHƤVƤVƤDƤLƤDƤGƤAƤFƤLƤRƤRƤPƤAƤNƤRƤQƤVƤVƤAƤSƤIƤVƤKƤAƤVƤSƤIƤPƤVƤQƤVƤGƤGƤGƤIƤRƤNƤLƤEƤAƤIƤRƤDƤYƤLƤDƤSƤGƤVƤEƤRƤAƤIƤIƤGƤTƤAƤAƤLƤRƤQƤPƤEƤIƤLƤEƤQƤAƤCƤ... | A0LHK5 | The user is requesting a protein from the HisA/HisF family. Let me reason through what I know about a suitable candidate.
The protein should be 256 amino acids long.
Looking at the biological process annotations, this protein is involved in L-tryptophan biosynthetic process, L-histidine biosynthetic process.
On the mol... | I would like a protein that is in the HisA/HisF family. | {
"MotifSeq": null,
"avg_len": "250.82895783611775",
"max_len": "281.0",
"min_len": "212.0",
"representative": "MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRSVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAERFGSQCIVVAIDAKKVSAPGEAPRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISE... |
Here is a Adenylate kinase family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤNƤIƤIƤLƤLƤGƤPƤPƤGƤAƤGƤKƤGƤTƤQƤAƤSƤRƤLƤIƤGƤKƤYƤAƤIƤPƤQƤIƤSƤTƤGƤDƤMƤLƤRƤAƤAƤLƤKƤEƤGƤTƤPƤLƤGƤLƤEƤAƤKƤKƤYƤMƤDƤQƤGƤAƤLƤVƤPƤDƤSƤVƤVƤIƤGƤLƤVƤKƤEƤRƤIƤQƤKƤPƤDƤCƤSƤKƤGƤYƤMƤLƤDƤGƤFƤPƤRƤN... | A0LIL1 | The user wants a Adenylate kinase family protein with comprehensive GO annotation coverage.
I should generate a protein with 213 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological processes AMP salva... | I would like a protein from Adenylate kinase family. | {
"MotifSeq": null,
"avg_len": "210.255751014885",
"max_len": "299.0",
"min_len": "36.0",
"representative": "MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP... |
Sure! Here is a protein from the Methyltransferase superfamily, PrmA family that matches your request.
<protein>MƤNƤGƤEƤWƤIƤGƤIƤDƤVƤAƤCƤGƤPƤDƤVƤAƤDƤDƤVƤAƤAƤEƤLƤAƤGƤTƤFƤGƤVƤSƤVƤEƤFƤRƤSƤTƤGƤIƤRƤFƤYƤLƤDƤAƤGƤSƤAƤPƤHƤDƤWƤRƤTƤTƤLƤEƤGƤIƤLƤRƤEƤMƤGƤTƤRƤRƤFƤPƤGƤAƤSƤFƤPƤYƤSƤVƤSƤTƤLƤAƤGƤDƤDƤWƤAƤDƤGƤWƤKƤAƤYƤFƤKƤPƤLƤRƤVƤGƤKƤHƤLƤVƤVƤ... | A0LQ64 | The user is requesting a protein from the Methyltransferase superfamily, PrmA family. Let me reason through what I know about a suitable candidate.
The protein should be 290 amino acids long.
Looking at the biological process annotations, this protein is involved in methylation.
On the molecular function side, the prot... | I would like a protein that is in the Methyltransferase superfamily, PrmA family. | {
"MotifSeq": null,
"avg_len": "290.32958801498125",
"max_len": "300.0",
"min_len": "207.0",
"representative": "MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASR... |
Sure! Here is a protein from the Universal ribosomal protein uL10 family that matches your request.
<protein>MƤPƤRƤPƤEƤKƤVƤQƤLƤVƤAƤEƤLƤTƤDƤRƤFƤAƤSƤSƤTƤAƤAƤVƤLƤTƤEƤYƤRƤGƤLƤSƤVƤAƤQƤLƤNƤEƤLƤRƤRƤAƤLƤNƤGƤDƤAƤEƤYƤTƤVƤVƤKƤNƤTƤLƤSƤKƤLƤAƤVƤRƤNƤAƤGƤLƤTƤEƤLƤEƤPƤLƤLƤQƤGƤPƤSƤAƤVƤAƤFƤVƤRƤGƤDƤPƤVƤKƤAƤAƤKƤSƤLƤRƤDƤFƤAƤRƤAƤNƤNƤAƤLƤVƤIƤK... | A0LRL1 | The user is requesting a protein from the Universal ribosomal protein uL10 family. Let me reason through what I know about a suitable candidate.
The protein should be 172 amino acids long.
Looking at the biological process annotations, this protein is involved in translation.
On the molecular function side, the protein... | I would like a protein that is in the Universal ribosomal protein uL10 family. | {
"MotifSeq": null,
"avg_len": "171.9016393442623",
"max_len": "297.0",
"min_len": "20.0",
"representative": "MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA",
"stddev_len": "20.434973040448... |
Sure! Here is a protein from the TACO1 family that matches your request.
<protein>MƤSƤGƤHƤSƤKƤWƤAƤTƤTƤKƤHƤKƤKƤAƤVƤIƤDƤAƤRƤRƤGƤKƤLƤFƤAƤKƤLƤIƤKƤNƤIƤEƤVƤAƤAƤRƤVƤGƤGƤPƤDƤPƤNƤGƤNƤPƤTƤLƤAƤDƤAƤIƤAƤKƤAƤRƤDƤQƤSƤVƤPƤNƤDƤNƤIƤEƤRƤAƤIƤRƤRƤGƤAƤGƤLƤEƤAƤGƤGƤTƤDƤWƤEƤPƤIƤIƤYƤEƤGƤYƤGƤPƤGƤGƤVƤAƤLƤLƤIƤEƤCƤLƤTƤDƤNƤRƤNƤRƤAƤAƤSƤEƤVƤRƤTƤTƤMƤTƤ... | A0LUK8 | The user wants a protein from the TACO1 family.
This protein should have around 248 amino acids long, which is within the expected range for TACO1 family members.
Proteins within this family are usually associated with regulation of DNA-templated transcription.
The protein is annotated with DNA binding.
The protein is ... | I would like a protein that is in the TACO1 family. | {
"MotifSeq": null,
"avg_len": "246.39082278481013",
"max_len": "297.0",
"min_len": "232.0",
"representative": "MSGHNKWSTIKHKKGAADAKRGKIFTKIIKEISVAAKLGGGDPAANPRLRTAIDKAKGENMPKDNIERAIKKGTGGMEGVVYEEIVYEGYGPGGVAVLVEVMTDNRNRTVSEVRSIFTKCNGNMGEAGCVAWMFDKKGVISYDTSLDFDQLFEAALEAGAEDVVEEDEQIEVYTEPSSFIEVRDALEAKGFKFQSAEI... |
Sure! Here is a protein from the RbfA family that matches your request.
<protein>MƤNƤDƤRƤAƤRƤAƤRƤKƤLƤAƤDƤRƤIƤKƤVƤVƤVƤAƤEƤTƤLƤEƤRƤRƤVƤKƤDƤPƤRƤLƤGƤFƤVƤTƤIƤTƤDƤAƤRƤVƤTƤPƤDƤLƤRƤEƤAƤTƤVƤFƤYƤTƤVƤLƤGƤDƤDƤTƤAƤLƤAƤEƤTƤAƤAƤAƤLƤEƤSƤAƤKƤGƤVƤLƤRƤAƤEƤVƤGƤRƤQƤTƤQƤVƤRƤFƤTƤPƤTƤLƤTƤFƤVƤPƤDƤTƤVƤPƤRƤQƤAƤRƤQƤIƤEƤEƤLƤLƤAƤRƤAƤRƤAƤAƤDƤRƤEƤVƤA... | A0LV25 | The user is requesting a protein from the RbfA family. Let me reason through what I know about a suitable candidate.
The protein should be 150 amino acids long.
Looking at the biological process annotations, this protein is involved in maturation of SSU-rRNA.
On the molecular function side, the protein is annotated wit... | I would like a protein that is in the RbfA family. | {
"MotifSeq": null,
"avg_len": "130.8421052631579",
"max_len": "215.0",
"min_len": "95.0",
"representative": "MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHDEERRVNPDDSKED",
"stddev_len": "14.554598531696522"
} |
Here is a RimM family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤTƤDƤSƤPƤEƤEƤTƤTƤVƤRƤVƤAƤVƤGƤRƤIƤTƤRƤAƤHƤGƤVƤHƤGƤEƤVƤGƤVƤQƤVƤRƤTƤDƤDƤPƤDƤRƤRƤFƤAƤAƤGƤAƤVƤLƤTƤTƤDƤTƤGƤVƤTƤLƤTƤVƤQƤRƤTƤRƤWƤHƤSƤGƤRƤLƤLƤVƤRƤFƤAƤGƤIƤDƤDƤRƤTƤTƤAƤEƤDƤLƤRƤGƤRƤVƤLƤFƤAƤEƤVƤDƤEƤRƤVƤRƤPƤEƤDƤPƤEƤEƤYƤYƤDƤYƤQƤLƤIƤ... | A0LV71 | The user wants a RimM family protein that operates specifically in the cytoplasm.
The protein should be 176 amino acids long, appropriate for a RimM family protein.
The protein is confirmed to localize to the cytoplasm.
The protein is associated with rRNA processing, ribosomal small subunit biogenesis.
The protein carr... | I want a RimM family protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "179.0210843373494",
"max_len": "248.0",
"min_len": "157.0",
"representative": "MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPGF",
"stddev_len"... |
Here is a Purine/pyrimidine phosphoribosyltransferase family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤEƤLƤKƤSƤYƤVƤRƤEƤIƤAƤDƤFƤPƤKƤKƤGƤVƤSƤYƤKƤDƤIƤTƤPƤLƤLƤLƤDƤPƤEƤAƤMƤRƤLƤAƤVƤKƤLƤFƤMƤKƤNƤLƤPƤHƤGƤKƤIƤDƤKƤVƤVƤGƤIƤEƤSƤRƤGƤFƤFƤFƤAƤTƤMƤLƤAƤEƤKƤLƤNƤAƤGƤFƤIƤPƤVƤRƤKƤPƤGƤKƤLƤPƤHƤRƤTƤHƤKƤE... | A0LYK2 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 171 amino acids long, an appropriate size for a Purine/pyrimidine phosphoribosyltransferase family protein operating in the cytoplasm.
The biological process annotations: ... | I want a Purine/pyrimidine phosphoribosyltransferase family protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "180.34225352112676",
"max_len": "284.0",
"min_len": "165.0",
"representative": "MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH",
"stddev_le... |
Sure! Here is a protein from the DMRL synthase family that matches your request.
<protein>MƤAƤTƤEƤGƤNƤNƤLƤSƤQƤYƤDƤKƤNƤTƤIƤPƤNƤAƤKƤDƤFƤRƤFƤGƤIƤVƤVƤSƤEƤWƤNƤEƤEƤIƤTƤEƤGƤLƤFƤQƤGƤAƤFƤDƤAƤWƤIƤEƤNƤGƤVƤQƤKƤEƤNƤIƤVƤRƤWƤNƤVƤPƤGƤSƤFƤEƤLƤIƤYƤGƤCƤKƤKƤMƤQƤQƤSƤFƤEƤMƤLƤDƤAƤIƤVƤAƤVƤGƤNƤVƤIƤQƤGƤEƤTƤKƤHƤFƤDƤFƤVƤCƤDƤGƤVƤTƤQƤGƤIƤKƤDƤLƤNƤVƤ... | A0LZH6 | The user wants a protein from the DMRL synthase family.
This protein should have around 168 amino acids long, which is within the expected range for DMRL synthase family members.
Proteins within this family are usually associated with riboflavin biosynthetic process.
The protein is annotated with 6,7-dimethyl-8-ribityl... | I would like a protein that is in the DMRL synthase family. | {
"MotifSeq": null,
"avg_len": "157.22705314009661",
"max_len": "227.0",
"min_len": "133.0",
"representative": "MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQVKDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA",
"stddev_len": "8.57988885438635"
} |
Here is a DapB family protein that fits your request.
<protein>MƤNƤIƤAƤLƤLƤGƤYƤGƤRƤMƤGƤQƤTƤIƤEƤEƤIƤSƤKƤNƤRƤDƤHƤKƤIƤVƤFƤKƤLƤDƤDƤDƤIƤEƤNƤHƤDƤLƤNƤDƤFƤEƤIƤDƤVƤAƤIƤDƤFƤSƤVƤPƤKƤAƤAƤFƤKƤNƤIƤTƤTƤCƤFƤKƤHƤAƤIƤPƤVƤVƤSƤGƤTƤTƤGƤWƤLƤDƤDƤYƤAƤKƤAƤRƤEƤIƤCƤKƤKƤEƤDƤSƤAƤFƤIƤYƤAƤSƤNƤFƤSƤLƤGƤVƤNƤVƤFƤFƤEƤLƤNƤQƤKƤLƤAƤGƤMƤMƤQƤGƤLƤEƤDƤYƤSƤVƤDƤI... | A0LZI4 | The user needs a DapB family protein for experimental use.
This protein is should be 239 amino acids long, within the expected size range for DapB family proteins.
The protein will be annotated with NAD binding, 4-hydroxy-tetrahydrodipicolinate reductase activity, oxidoreductase activity, acting on CH or CH2 groups, NA... | I would like a protein from DapB family. | {
"MotifSeq": null,
"avg_len": "261.72370766488416",
"max_len": "298.0",
"min_len": "185.0",
"representative": "MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYT... |
Here is a Universal ribosomal protein uS3 family protein localized to the cytosolic small ribosomal subunit, matching your spatial requirement.
<protein>MƤGƤQƤKƤTƤNƤPƤIƤGƤNƤRƤLƤGƤIƤIƤRƤGƤWƤEƤSƤNƤWƤYƤGƤGƤNƤDƤYƤGƤDƤKƤLƤAƤEƤDƤDƤKƤIƤRƤKƤYƤIƤHƤAƤRƤLƤSƤKƤAƤSƤVƤSƤRƤVƤIƤIƤEƤRƤTƤLƤKƤLƤVƤTƤVƤTƤIƤTƤTƤAƤRƤPƤGƤIƤIƤIƤGƤKƤGƤGƤQƤEƤVƤD... | A0M592 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 239 amino acids long, an appropriate size for a Universal ribosomal protein uS3 family protein operating in the cytosolic small ribosomal subunit.
The biological process a... | I want a Universal ribosomal protein uS3 family protein that is active in the cytosolic small ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "233.6240837696335",
"max_len": "299.0",
"min_len": "163.0",
"representative": "MGQKVHPNGIRLGIVKAWNSTWYANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVK... |
Sure! Here is a protein from the UppP family that matches your request.
<protein>MƤDƤIƤFƤDƤAƤIƤVƤLƤGƤIƤIƤQƤGƤLƤTƤEƤFƤLƤPƤVƤSƤSƤSƤGƤHƤLƤEƤLƤGƤKƤAƤIƤLƤGƤDƤTƤSƤLƤPƤEƤEƤSƤLƤLƤFƤTƤVƤVƤLƤHƤFƤAƤTƤAƤLƤSƤTƤLƤVƤVƤFƤRƤKƤDƤVƤFƤEƤIƤFƤSƤGƤLƤLƤKƤFƤKƤWƤNƤEƤEƤTƤQƤFƤSƤLƤKƤIƤIƤIƤSƤMƤLƤPƤAƤVƤIƤVƤGƤLƤLƤFƤEƤEƤQƤLƤEƤAƤLƤFƤGƤGƤNƤIƤLƤFƤVƤGƤFƤM... | A0M5T6 | The user is requesting a protein from the UppP family. Let me reason through what I know about a suitable candidate.
The protein should be 264 amino acids long.
Looking at the biological process annotations, this protein is involved in peptidoglycan biosynthetic process, cell wall organization, response to antibiotic.
... | I would like a protein that is in the UppP family. | {
"MotifSeq": null,
"avg_len": "272.9375",
"max_len": "299.0",
"min_len": "181.0",
"representative": "MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPAVVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGAT... |
Here is a short RecO family protein (239 amino acids) that meets your size requirement.
<protein>MƤLƤIƤHƤTƤKƤAƤIƤIƤIƤSƤAƤLƤKƤYƤGƤEƤAƤDƤLƤIƤVƤKƤAƤYƤTƤLƤSƤDƤGƤLƤCƤTƤYƤMƤLƤKƤGƤVƤLƤKƤSƤRƤKƤGƤKƤFƤKƤAƤSƤMƤFƤQƤSƤLƤTƤQƤLƤEƤIƤVƤAƤNƤHƤRƤGƤGƤGƤKƤMƤEƤYƤLƤKƤEƤAƤKƤVƤTƤGƤNƤYƤQƤSƤLƤHƤTƤHƤPƤIƤKƤLƤAƤMƤVƤMƤFƤLƤAƤEƤMƤLƤRƤNƤAƤIƤRƤEƤEƤEƤSƤN... | A0M684 | The user is asking for a short RecO family protein. Length is the primary filter here.
At 239 amino acids, this protein qualifies as short.
The biological process annotations cover double-strand break repair, DNA recombination.
The protein should reside in the bacterial nucleoid. | Give me a short RecO family protein. | {
"MotifSeq": null,
"avg_len": "249.63877551020408",
"max_len": "300.0",
"min_len": "225.0",
"representative": "MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPD... |
Here is a Universal ribosomal protein uS4 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤAƤRƤYƤTƤGƤPƤVƤTƤRƤKƤSƤRƤRƤLƤGƤTƤDƤLƤVƤGƤGƤDƤQƤSƤFƤEƤKƤRƤPƤYƤPƤPƤGƤQƤHƤGƤRƤAƤRƤIƤKƤDƤSƤEƤYƤRƤQƤQƤLƤQƤEƤKƤQƤKƤAƤRƤFƤTƤYƤGƤVƤMƤEƤKƤQƤFƤRƤRƤYƤYƤEƤEƤAƤVƤRƤHƤSƤGƤKƤTƤ... | A0PMB6 | The user wants a Universal ribosomal protein uS4 family protein with comprehensive GO annotation coverage.
I should generate a protein with 201 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological proc... | I would like a protein from Universal ribosomal protein uS4 family. | {
"MotifSeq": null,
"avg_len": "201.7742782152231",
"max_len": "300.0",
"min_len": "77.0",
"representative": "MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI... |
Here is a PRA-CH family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤTƤLƤDƤPƤNƤVƤAƤAƤRƤLƤKƤRƤNƤAƤDƤGƤLƤFƤTƤAƤVƤVƤQƤEƤRƤGƤSƤGƤDƤVƤLƤMƤVƤAƤWƤMƤDƤDƤDƤAƤLƤDƤRƤTƤLƤKƤTƤRƤEƤAƤTƤYƤYƤSƤRƤSƤRƤGƤEƤQƤWƤVƤKƤGƤAƤTƤSƤGƤHƤTƤQƤYƤVƤHƤSƤVƤRƤLƤDƤCƤDƤGƤDƤTƤVƤLƤLƤTƤVƤDƤQƤVƤG... | A0PP21 | The user is asking for a PRA-CH family protein.
The protein should spans 111 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in L-histidine biosynthetic process.
The protein carries annotations for phosphoribosyl-AMP cyclohydrol... | I would like a PRA-CH family protein. | {
"MotifSeq": null,
"avg_len": "141.63352272727272",
"max_len": "281.0",
"min_len": "85.0",
"representative": "MSTSTKWLNEVKWDENGLVPVIAQEASTGDVLMFAWMNREALQRTAETGNAIYWSRSRRKLWHKGEESGHVQKVVELRIDCDNDVVLMKVEQVGGIACHTGRHSCFFQKYLADGRWETVEPVLKDPKDIYS",
"stddev_len": "33.73365276494051"
} |
Sure! Here is a protein from the Purine/pyrimidine phosphoribosyltransferase family that matches your request.
<protein>MƤTƤDƤLƤVƤVƤTƤGƤRƤGƤSƤAƤPƤVƤAƤDƤLƤIƤSƤSƤLƤTƤRƤDƤVƤAƤDƤFƤPƤKƤPƤGƤIƤQƤFƤKƤDƤLƤTƤPƤLƤFƤAƤDƤRƤEƤAƤMƤAƤAƤVƤIƤDƤAƤLƤAƤDƤIƤAƤAƤGƤTƤDƤLƤVƤAƤGƤIƤEƤSƤRƤGƤSƤLƤVƤAƤAƤAƤLƤAƤAƤRƤLƤGƤTƤGƤVƤLƤSƤIƤRƤKƤSƤGƤKƤLƤPƤPƤPƤVƤ... | A0PPE4 | The user is requesting a protein from the Purine/pyrimidine phosphoribosyltransferase family. Let me reason through what I know about a suitable candidate.
The protein should be 184 amino acids long.
Looking at the biological process annotations, this protein is involved in AMP salvage, adenine salvage, purine ribonucl... | I would like a protein that is in the Purine/pyrimidine phosphoribosyltransferase family. | {
"MotifSeq": null,
"avg_len": "180.34225352112676",
"max_len": "284.0",
"min_len": "165.0",
"representative": "MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH",
"stddev_le... |
Here is a RimM family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤEƤLƤVƤIƤGƤRƤVƤVƤKƤAƤHƤGƤIƤTƤGƤEƤVƤVƤVƤEƤIƤRƤTƤDƤEƤPƤDƤRƤRƤFƤTƤPƤGƤAƤSƤLƤRƤAƤKƤRƤSƤRƤDƤGƤGƤTƤGƤRƤNƤYƤVƤIƤEƤGƤVƤRƤEƤHƤGƤAƤRƤLƤLƤVƤRƤLƤAƤGƤVƤNƤDƤRƤDƤTƤAƤDƤGƤLƤRƤGƤSƤLƤFƤVƤIƤDƤSƤAƤDƤLƤPƤPƤIƤEƤEƤPƤDƤTƤYƤYƤDƤHƤQƤLƤEƤGƤLƤRƤ... | A0PQ65 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 174 amino acids long, an appropriate size for a RimM family protein operating in the cytoplasm.
The biological process annotations: ribosomal small subunit biogenesis, rRN... | I want a RimM family protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "179.0210843373494",
"max_len": "248.0",
"min_len": "157.0",
"representative": "MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPGF",
"stddev_len"... |
Here is a DapB family protein that fits your request.
<protein>MƤRƤVƤGƤVƤLƤGƤAƤKƤGƤKƤVƤGƤAƤTƤMƤVƤSƤAƤVƤEƤSƤAƤAƤDƤLƤTƤLƤSƤAƤEƤVƤDƤAƤGƤDƤPƤLƤSƤTƤLƤTƤEƤTƤNƤTƤEƤAƤVƤIƤDƤFƤTƤHƤPƤDƤVƤVƤMƤGƤNƤLƤEƤFƤLƤIƤFƤNƤGƤIƤHƤAƤVƤVƤGƤTƤTƤGƤFƤTƤAƤEƤRƤVƤEƤQƤVƤQƤSƤWƤLƤAƤKƤKƤPƤSƤTƤAƤVƤLƤIƤAƤPƤNƤFƤAƤIƤGƤAƤVƤLƤSƤMƤHƤFƤAƤKƤQƤAƤAƤPƤFƤFƤDƤSƤAƤEƤIƤI... | A0PQF8 | The user needs a DapB family protein for experimental use.
This protein is should be 245 amino acids long, within the expected size range for DapB family proteins.
The protein will be annotated with NADP binding, oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor, NAD binding. These MF terms p... | I would like a protein from DapB family. | {
"MotifSeq": null,
"avg_len": "261.72370766488416",
"max_len": "298.0",
"min_len": "185.0",
"representative": "MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYT... |
Sure! Here is a protein from the AccD/PCCB family that matches your request.
<protein>MƤFƤKƤIƤNƤPƤIƤFƤKƤKƤTƤKƤYƤIƤTƤIƤNƤTƤSƤKƤDƤNƤNƤIƤNƤKƤEƤNƤIƤPƤNƤIƤPƤEƤGƤMƤWƤVƤKƤCƤDƤRƤCƤGƤKƤTƤLƤYƤKƤKƤDƤLƤDƤEƤNƤLƤKƤVƤCƤKƤFƤCƤNƤKƤHƤYƤRƤMƤNƤAƤWƤEƤRƤIƤDƤLƤIƤVƤDƤTƤGƤTƤFƤRƤEƤFƤGƤEƤNƤIƤTƤSƤKƤNƤPƤLƤDƤFƤSƤGƤYƤEƤDƤKƤLƤKƤGƤIƤKƤEƤKƤTƤKƤLƤKƤEƤGƤ... | A0PXC5 | The user is requesting a protein from the AccD/PCCB family. Let me reason through what I know about a suitable candidate.
The protein should be 287 amino acids long.
Looking at the biological process annotations, this protein is involved in fatty acid biosynthetic process, malonyl-CoA biosynthetic process.
On the molec... | I would like a protein that is in the AccD/PCCB family. | {
"MotifSeq": null,
"avg_len": "285.76895306859205",
"max_len": "300.0",
"min_len": "106.0",
"representative": "MLRDLFVKKKKYAAIPSEQVRKDVPDGVMTKCPKCKKIMYTKEVLKNLKVCVNCGYHHPMNAWERLDSILDEGSFREYDKEMVSLNPLEFPDYEEKLESDRKKTELNEAVVTGEGTIDDMLVVVAVMDSRFRMGSMGSVVGEKIARAVEKAYDLQVPFIIFTASGGARMQEGILSLMQMAKTSVALKKHSNAGGLFIS... |
Here is a Universal ribosomal protein uS4 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤAƤRƤYƤIƤGƤAƤTƤCƤRƤLƤCƤRƤRƤEƤGƤMƤKƤLƤFƤLƤKƤGƤDƤRƤCƤYƤTƤDƤKƤCƤAƤFƤAƤRƤRƤSƤYƤAƤPƤGƤQƤHƤGƤQƤGƤRƤKƤKƤLƤSƤNƤYƤGƤVƤQƤLƤRƤEƤKƤQƤKƤAƤRƤRƤIƤYƤGƤIƤLƤEƤAƤQƤFƤRƤKƤYƤYƤEƤKƤAƤ... | A0PXX4 | The user wants a Universal ribosomal protein uS4 family protein with comprehensive GO annotation coverage.
I should generate a protein with 206 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological proc... | I would like a protein from Universal ribosomal protein uS4 family. | {
"MotifSeq": null,
"avg_len": "201.7742782152231",
"max_len": "300.0",
"min_len": "77.0",
"representative": "MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI... |
Here is a DapB family protein that fits your request.
<protein>MƤTƤKƤVƤIƤLƤSƤGƤCƤSƤGƤKƤMƤGƤKƤMƤIƤSƤQƤSƤVƤNƤNƤFƤEƤGƤLƤSƤIƤVƤAƤGƤIƤDƤKƤFƤKƤDƤEƤSƤLƤKƤYƤPƤIƤFƤEƤNƤIƤTƤEƤCƤDƤVƤNƤAƤDƤVƤVƤLƤDƤFƤSƤRƤPƤDƤAƤLƤDƤSƤLƤLƤSƤYƤSƤKƤDƤNƤNƤLƤPƤVƤVƤLƤCƤTƤTƤGƤYƤSƤKƤEƤQƤLƤDƤKƤIƤDƤEƤYƤSƤKƤIƤVƤPƤVƤFƤHƤSƤAƤNƤMƤSƤIƤGƤIƤNƤLƤIƤNƤNƤIƤLƤKƤDƤIƤSƤAƤM... | A0PZM2 | The user is looking for a protein from the DapB family.
The generated protein should have around 252 amino acids, which is within the expected size range for DapB family proteins.
This family is usually annotated with NADP binding, 4-hydroxy-tetrahydrodipicolinate reductase activity, NAD binding.
Subcellularly, the pr... | I would like a DapB family protein. | {
"MotifSeq": null,
"avg_len": "261.72370766488416",
"max_len": "298.0",
"min_len": "185.0",
"representative": "MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYT... |
Sure! Here is a protein from the Peptidase A8 family that matches your request.
<protein>MƤNƤLƤLƤRƤPƤKƤLƤKƤYƤFƤIƤLƤAƤIƤLƤIƤIƤAƤAƤDƤLƤYƤTƤKƤYƤLƤAƤNƤTƤYƤLƤEƤFƤAƤQƤSƤVƤKƤIƤTƤSƤFƤFƤNƤLƤTƤLƤLƤYƤNƤHƤGƤAƤAƤFƤSƤLƤLƤSƤNƤDƤQƤTƤSƤWƤQƤMƤIƤMƤFƤSƤTƤIƤSƤLƤIƤAƤAƤIƤVƤLƤIƤYƤLƤIƤIƤKƤQƤPƤIƤTƤEƤKƤIƤNƤLƤFƤSƤFƤAƤLƤIƤLƤGƤGƤAƤLƤGƤNƤFƤYƤDƤRƤAƤF... | A0Q528 | The user wants a protein from the Peptidase A8 family.
This protein should have around 161 amino acids long, which is within the expected range for Peptidase A8 family members.
Proteins within this family are usually associated with proteolysis.
The protein is annotated with aspartic-type endopeptidase activity.
The pr... | I would like a protein that is in the Peptidase A8 family. | {
"MotifSeq": null,
"avg_len": "166.28333333333333",
"max_len": "240.0",
"min_len": "145.0",
"representative": "MSKPLCSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVGLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVILLVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADSAICIGAALIVLEGFLPKPTAKEQA",
"stddev_len": "13.692260703... |
Here is a Glutaminase PdxT/SNO family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤTƤQƤKƤVƤGƤVƤLƤAƤIƤQƤGƤGƤYƤQƤKƤHƤAƤDƤMƤFƤKƤSƤLƤGƤVƤEƤVƤKƤLƤVƤKƤFƤNƤNƤDƤFƤDƤSƤIƤDƤRƤLƤVƤIƤPƤGƤGƤEƤSƤTƤTƤLƤLƤNƤLƤLƤNƤKƤHƤQƤIƤFƤDƤKƤLƤYƤNƤFƤCƤSƤSƤKƤPƤVƤFƤGƤTƤCƤAƤGƤSƤIƤVƤLƤSƤK... | A0Q5I2 | The user is asking for a Glutaminase PdxT/SNO family protein.
The protein should spans 179 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in pyridoxal 5'-phosphate biosynthetic process, L-glutamine catabolic process, pyridoxine... | I would like a Glutaminase PdxT/SNO family protein. | {
"MotifSeq": null,
"avg_len": "195.96031746031747",
"max_len": "255.0",
"min_len": "173.0",
"representative": "MMKIGVLGLQGAVQEHVRSIEACGAEAVVVKKIEQLEEIDGLILPGGESTTMRRLMDKYGFIEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQRESFEAELSIAGVADDFIGVFIRAPHIVEVGEDVEVLAKYEGRIVAARQGQFLGCSFHPELTDDYRMTQYFLNMVKEAKA",
"... |
Sure! Here is a protein from the Ribose 5-phosphate isomerase family that matches your request.
<protein>MƤFƤFƤNƤKƤKƤNƤNƤQƤDƤEƤLƤKƤKƤLƤAƤAƤTƤEƤAƤAƤKƤSƤIƤTƤTƤEƤIƤTƤLƤGƤVƤGƤTƤGƤSƤTƤVƤGƤFƤLƤIƤEƤEƤLƤVƤNƤYƤRƤDƤKƤIƤKƤTƤVƤVƤSƤSƤSƤEƤDƤSƤTƤRƤKƤLƤKƤAƤLƤGƤFƤDƤVƤVƤDƤLƤNƤYƤAƤGƤEƤIƤDƤLƤYƤIƤDƤGƤAƤDƤEƤCƤNƤNƤHƤKƤEƤLƤIƤKƤGƤGƤGƤAƤAƤLƤTƤR... | A0Q756 | The user is requesting a protein from the Ribose 5-phosphate isomerase family. Let me reason through what I know about a suitable candidate.
The protein should be 224 amino acids long.
Looking at the biological process annotations, this protein is involved in pentose-phosphate shunt, non-oxidative branch, D-ribose meta... | I would like a protein that is in the Ribose 5-phosphate isomerase family. | {
"MotifSeq": null,
"avg_len": "228.15869565217392",
"max_len": "296.0",
"min_len": "215.0",
"representative": "MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKLKGLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVYGMEILDPIALENAINAIPGVVTVGLF... |
Here is a TACO1 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤSƤGƤHƤSƤKƤWƤAƤTƤTƤKƤHƤKƤKƤAƤVƤIƤDƤAƤRƤRƤGƤKƤMƤFƤAƤRƤLƤIƤKƤNƤIƤEƤVƤAƤAƤRƤVƤGƤGƤGƤDƤPƤAƤGƤNƤPƤTƤLƤYƤDƤAƤIƤQƤKƤAƤKƤKƤSƤSƤVƤPƤNƤEƤNƤIƤEƤRƤAƤRƤKƤRƤGƤAƤGƤEƤEƤAƤGƤGƤAƤDƤWƤQƤTƤIƤTƤYƤEƤGƤYƤAƤPƤNƤ... | A0QIC5 | The user is asking for a TACO1 family protein.
The protein should spans 250 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in regulation of DNA-templated transcription.
The protein carries annotations for DNA binding. | I would like a TACO1 family protein. | {
"MotifSeq": null,
"avg_len": "246.39082278481013",
"max_len": "297.0",
"min_len": "232.0",
"representative": "MSGHNKWSTIKHKKGAADAKRGKIFTKIIKEISVAAKLGGGDPAANPRLRTAIDKAKGENMPKDNIERAIKKGTGGMEGVVYEEIVYEGYGPGGVAVLVEVMTDNRNRTVSEVRSIFTKCNGNMGEAGCVAWMFDKKGVISYDTSLDFDQLFEAALEAGAEDVVEEDEQIEVYTEPSSFIEVRDALEAKGFKFQSAEI... |
Sure! Here is a protein from the Complex I 20 kDa subunit family that matches your request.
<protein>MƤGƤLƤEƤEƤQƤLƤPƤGƤGƤIƤLƤLƤSƤTƤVƤEƤKƤVƤAƤGƤYƤVƤRƤKƤNƤSƤLƤWƤPƤAƤTƤFƤGƤLƤAƤCƤCƤAƤIƤEƤMƤMƤAƤTƤAƤGƤPƤRƤFƤDƤIƤAƤRƤFƤGƤMƤEƤRƤFƤSƤAƤTƤPƤRƤQƤAƤDƤLƤMƤIƤVƤAƤGƤRƤVƤSƤQƤKƤMƤAƤPƤVƤLƤRƤQƤIƤYƤDƤQƤMƤAƤEƤPƤKƤWƤVƤLƤAƤMƤGƤVƤCƤAƤSƤSƤGƤGƤMƤF... | A0QJU8 | The user is requesting a protein from the Complex I 20 kDa subunit family. Let me reason through what I know about a suitable candidate.
The protein should be 184 amino acids long.
Looking at the biological process annotations, this protein is involved in aerobic respiration, electron transport coupled proton transport... | I would like a protein that is in the Complex I 20 kDa subunit family. | {
"MotifSeq": null,
"avg_len": "198.38832116788322",
"max_len": "281.0",
"min_len": "148.0",
"representative": "MSIEGVLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRRTSTIARQ",
"stddev_len": "29.400359690915007"... |
Sure! Here is a protein from the Universal ribosomal protein uS7 family that matches your request.
<protein>MƤPƤRƤKƤGƤPƤAƤPƤKƤRƤPƤLƤVƤNƤDƤPƤVƤYƤGƤSƤQƤLƤVƤTƤQƤLƤVƤNƤKƤVƤLƤLƤKƤGƤKƤKƤSƤLƤAƤEƤRƤIƤVƤYƤGƤAƤLƤEƤNƤAƤRƤEƤKƤTƤGƤTƤDƤPƤVƤIƤTƤLƤKƤRƤAƤLƤDƤNƤVƤKƤPƤAƤLƤEƤVƤRƤSƤRƤRƤVƤGƤGƤAƤTƤYƤQƤVƤPƤVƤEƤVƤRƤPƤDƤRƤSƤTƤTƤLƤAƤLƤRƤWƤLƤVƤSƤ... | A0QL37 | The user wants a protein from the Universal ribosomal protein uS7 family.
This protein should have around 156 amino acids long, which is within the expected range for Universal ribosomal protein uS7 family members.
Proteins within this family are usually associated with translation.
The protein is annotated with rRNA b... | I would like a protein that is in the Universal ribosomal protein uS7 family. | {
"MotifSeq": null,
"avg_len": "159.93950504124658",
"max_len": "259.0",
"min_len": "9.0",
"representative": "MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW",
"stddev_len": "16.394841640447193"
} |
Here is a Universal ribosomal protein uL10 family protein localized to the large ribosomal subunit, matching your spatial requirement.
<protein>MƤAƤKƤAƤDƤKƤAƤTƤAƤVƤAƤDƤIƤAƤEƤQƤFƤKƤAƤSƤTƤAƤTƤVƤVƤTƤEƤYƤRƤGƤLƤTƤVƤAƤNƤLƤAƤEƤLƤRƤRƤAƤLƤGƤDƤSƤAƤTƤYƤTƤVƤAƤKƤNƤTƤLƤVƤKƤRƤAƤAƤSƤEƤAƤGƤIƤEƤGƤLƤDƤEƤLƤFƤAƤGƤPƤTƤAƤIƤAƤFƤVƤKƤGƤEƤAƤVƤDƤ... | A0QS62 | The user wants a Universal ribosomal protein uL10 family protein that operates specifically in the large ribosomal subunit.
The protein should be 175 amino acids long, appropriate for a Universal ribosomal protein uL10 family protein.
The protein is confirmed to localize to the large ribosomal subunit.
The protein is a... | I want a Universal ribosomal protein uL10 family protein that is active in the large ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "171.9016393442623",
"max_len": "297.0",
"min_len": "20.0",
"representative": "MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA",
"stddev_len": "20.434973040448... |
Sure! Here is a protein from the Adenylate kinase family that matches your request.
<protein>MƤRƤVƤVƤLƤLƤGƤPƤPƤGƤAƤGƤKƤGƤTƤQƤAƤEƤKƤLƤSƤEƤKƤLƤGƤIƤPƤQƤIƤSƤTƤGƤDƤLƤFƤRƤKƤNƤIƤGƤDƤGƤTƤPƤLƤGƤLƤEƤAƤKƤRƤYƤLƤDƤAƤGƤDƤLƤVƤPƤAƤEƤLƤTƤNƤRƤLƤVƤEƤDƤRƤIƤDƤQƤPƤDƤAƤAƤEƤGƤFƤIƤLƤDƤGƤYƤPƤRƤSƤVƤEƤQƤAƤGƤAƤLƤKƤDƤMƤLƤAƤAƤRƤNƤTƤKƤLƤDƤAƤVƤLƤEƤFƤQ... | A0QSH8 | The user is requesting a protein from the Adenylate kinase family. Let me reason through what I know about a suitable candidate.
The protein should be 181 amino acids long.
Looking at the biological process annotations, this protein is involved in AMP salvage.
On the molecular function side, the protein is annotated wi... | I would like a protein that is in the Adenylate kinase family. | {
"MotifSeq": null,
"avg_len": "210.255751014885",
"max_len": "299.0",
"min_len": "36.0",
"representative": "MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP... |
Sure! Here is a protein from the Bacterial ribosomal protein bL28 family that matches your request.
<protein>MƤAƤAƤVƤCƤDƤIƤCƤGƤKƤGƤPƤGƤFƤGƤKƤSƤVƤSƤHƤSƤHƤRƤRƤTƤSƤRƤRƤWƤNƤPƤNƤIƤQƤPƤVƤRƤAƤVƤTƤRƤPƤGƤGƤNƤKƤQƤRƤIƤNƤAƤCƤTƤSƤCƤIƤKƤAƤGƤKƤVƤSƤRƤA</protein> | A0QV03 | The user wants a protein from the Bacterial ribosomal protein bL28 family.
This protein should have around 64 amino acids long, which is within the expected range for Bacterial ribosomal protein bL28 family members.
Proteins within this family are usually associated with translation.
The protein is annotated with struc... | I would like a protein that is in the Bacterial ribosomal protein bL28 family. | {
"MotifSeq": null,
"avg_len": "77.6258234519104",
"max_len": "274.0",
"min_len": "61.0",
"representative": "MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV",
"stddev_len": "20.78060206007863"
} |
Here is a Ribonuclease III family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤTƤDƤSƤHƤAƤAƤLƤLƤEƤAƤLƤGƤVƤAƤLƤPƤAƤEƤLƤLƤTƤIƤAƤLƤTƤHƤRƤSƤYƤSƤYƤEƤNƤGƤGƤLƤPƤTƤNƤEƤRƤLƤEƤFƤLƤGƤDƤAƤVƤLƤGƤLƤTƤIƤTƤEƤEƤLƤYƤHƤRƤHƤPƤDƤRƤAƤEƤGƤDƤLƤAƤKƤLƤRƤAƤSƤIƤVƤNƤTƤQƤAƤLƤAƤDƤVƤGƤRƤGƤLƤTƤDƤEƤGƤLƤGƤAƤHƤLƤFƤLƤGƤ... | A0QV20 | The user wants a Ribonuclease III family protein that operates specifically in the cytoplasm.
The protein should be 230 amino acids long, appropriate for a Ribonuclease III family protein.
The protein is confirmed to localize to the cytoplasm.
The protein is associated with rRNA processing, tRNA processing, mRNA proces... | I want a Ribonuclease III family protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "234.73727087576376",
"max_len": "290.0",
"min_len": "221.0",
"representative": "MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLS... |
Here is a Bacterial ribosomal protein bL21 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤAƤTƤYƤAƤIƤVƤKƤTƤGƤGƤKƤQƤYƤKƤVƤAƤAƤGƤDƤVƤVƤKƤVƤEƤKƤLƤDƤSƤEƤPƤGƤAƤSƤVƤSƤLƤPƤVƤAƤLƤVƤVƤDƤGƤAƤNƤVƤTƤSƤKƤAƤDƤDƤLƤAƤKƤVƤAƤVƤTƤAƤEƤVƤLƤEƤHƤTƤKƤGƤPƤKƤIƤRƤIƤHƤKƤFƤKƤNƤK... | A0R151 | The user is asking for a Bacterial ribosomal protein bL21 family protein.
The protein should spans 103 amino acids, a size consistent with a multidomain architecture carrying multiple functional roles.
The generated protein should be involved in translation.
The protein carries annotations for structural constituent of... | I would like a Bacterial ribosomal protein bL21 family protein. | {
"MotifSeq": null,
"avg_len": "109.0374677002584",
"max_len": "270.0",
"min_len": "31.0",
"representative": "MSYAVIVTGGKQYKVAEGEFLKIEKLEVATGESVTFDRVLLVANGEEVTIGAPVVAGAKVVAEVVSQGRHDKVRIIKFRRRKHHMKRMGHRQWFTEIKITGIQA",
"stddev_len": "19.968018201322522"
} |
Here is a Methyltransferase superfamily, RNA methyltransferase RsmG family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤKƤHƤGƤSƤVƤPƤAƤTƤPƤEƤAƤAƤSƤLƤVƤFƤGƤDƤRƤLƤEƤAƤAƤEƤLƤYƤAƤRƤIƤLƤAƤGƤAƤGƤVƤEƤWƤGƤLƤLƤGƤPƤRƤEƤVƤDƤRƤVƤWƤEƤRƤHƤIƤLƤNƤSƤAƤAƤLƤGƤE... | A0R7J5 | The user is filtering for a protein within the Methyltransferase superfamily, RNA methyltransferase RsmG family. The primary evidence axis here is molecular function.
The protein is 235 amino acids long.
The molecular function annotations are the key evidence: rRNA (guanine-N7-)-methyltransferase activity.
The protein ... | I need a Methyltransferase superfamily, RNA methyltransferase RsmG family protein. | {
"MotifSeq": null,
"avg_len": "221.5652818991098",
"max_len": "277.0",
"min_len": "137.0",
"representative": "MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHL... |
Here is a Thymidylate kinase family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤKƤGƤLƤFƤVƤTƤIƤEƤGƤPƤEƤGƤSƤGƤKƤTƤTƤLƤIƤQƤSƤLƤLƤPƤYƤFƤEƤQƤKƤEƤQƤKƤVƤMƤAƤTƤRƤEƤPƤGƤGƤIƤAƤIƤSƤEƤDƤIƤRƤTƤIƤLƤHƤKƤQƤEƤYƤTƤMƤMƤEƤAƤRƤTƤEƤAƤLƤLƤYƤAƤAƤAƤRƤRƤQƤHƤLƤVƤEƤKƤVƤMƤPƤAƤLƤNƤD... | A0R8A3 | The user wants a Thymidylate kinase family protein with comprehensive GO annotation coverage.
I should generate a protein with 208 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological processes dTTP bi... | I would like a protein from Thymidylate kinase family. | {
"MotifSeq": null,
"avg_len": "209.7411003236246",
"max_len": "263.0",
"min_len": "156.0",
"representative": "MTGLFITLEGPEGAGKSTNREYLAERLRAAGIEVVLTREPGGTPLAERIREVLLAPVDEVMNPDTELLLVFAARAQHLAEVIRPALARGAVVLCDRFTDSTYAYQGGGRGLSLERIAALETFVQGDLRPDLTLIFDLPVEIGLARASARGRLDRFELEGREFFEAVRNAFLKRAEDDPARYVRIDAGQPLVKVQQSLDT... |
Here is a ABC transporter superfamily, Energy-coupling factor EcfA family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤKƤKƤEƤKƤLƤRƤTƤEƤNƤIƤSƤFƤQƤYƤPƤGƤAƤAƤTƤYƤAƤLƤKƤDƤVƤSƤFƤSƤLƤFƤEƤGƤEƤWƤVƤSƤVƤIƤGƤQƤNƤGƤSƤGƤKƤSƤTƤLƤAƤKƤLƤLƤNƤGƤLƤFƤLƤPƤEƤAƤGƤ... | A0R8K8 | The user is filtering for a protein within the ABC transporter superfamily, Energy-coupling factor EcfA family. The primary evidence axis here is molecular function.
The protein is 280 amino acids long.
The molecular function annotations are the key evidence: ATPase-coupled transmembrane transporter activity, cobalt io... | I need a ABC transporter superfamily, Energy-coupling factor EcfA family protein. | {
"MotifSeq": null,
"avg_len": "280.77127659574467",
"max_len": "300.0",
"min_len": "259.0",
"representative": "MSINLQNVSYTYQAGTPFEGRALFNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSIRKHVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFKKLHQSGMTI... |
Here is a protein from the RecX family.
<protein>MƤAƤVƤIƤTƤKƤIƤEƤVƤQƤKƤRƤSƤKƤEƤRƤFƤNƤIƤYƤIƤDƤKƤGƤQƤGƤEƤEƤYƤGƤFƤSƤVƤNƤEƤVƤIƤLƤIƤKƤHƤGƤLƤQƤKƤGƤLƤEƤIƤDƤEƤIƤAƤLƤGƤNƤIƤLƤYƤNƤEƤEƤVƤQƤKƤAƤYƤLƤQƤAƤIƤSƤYƤLƤSƤYƤQƤMƤRƤTƤKƤLƤEƤIƤEƤDƤFƤLƤRƤKƤKƤEƤVƤGƤQƤAƤIƤIƤSƤEƤVƤVƤSƤKƤLƤLƤHƤDƤRƤYƤIƤNƤDƤKƤEƤYƤAƤIƤLƤYƤTƤRƤTƤQƤSƤNƤVƤNƤRƤKƤGƤPƤTƤVƤIƤK... | A0R9F4 | The user wants any protein belonging to the RecX family.
This protein should be around 270 amino acids long, consistent with the RecX family size range.
Proteins within this family are associated with regulation of DNA repair. These GO-BP terms establish its cellular relevance.
No MF annotations are provided for this p... | Can you give me a protein belonging to the RecX family? | {
"MotifSeq": null,
"avg_len": "201.02836879432624",
"max_len": "272.0",
"min_len": "20.0",
"representative": "MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD",
"stddev_len": "51.7816306293... |
Here is a PRA-CH family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤKƤPƤNƤFƤSƤKƤGƤLƤLƤPƤAƤVƤVƤIƤEƤEƤGƤTƤKƤEƤVƤLƤMƤLƤAƤYƤMƤNƤEƤEƤAƤYƤEƤKƤTƤLƤKƤTƤKƤRƤTƤWƤFƤYƤSƤRƤSƤRƤRƤSƤLƤWƤNƤKƤGƤEƤTƤSƤGƤHƤVƤQƤHƤVƤQƤSƤLƤYƤLƤDƤCƤDƤQƤDƤSƤIƤVƤVƤVƤVƤKƤQƤVƤGƤPƤAƤCƤHƤTƤGƤEƤKƤT... | A0RBM3 | The user wants a PRA-CH family protein with comprehensive GO annotation coverage.
I should generate a protein with 101 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological processes L-histidine biosynt... | I would like a protein from PRA-CH family. | {
"MotifSeq": null,
"avg_len": "141.63352272727272",
"max_len": "281.0",
"min_len": "85.0",
"representative": "MSTSTKWLNEVKWDENGLVPVIAQEASTGDVLMFAWMNREALQRTAETGNAIYWSRSRRKLWHKGEESGHVQKVVELRIDCDNDVVLMKVEQVGGIACHTGRHSCFFQKYLADGRWETVEPVLKDPKDIYS",
"stddev_len": "33.73365276494051"
} |
Here is a Bacterial ribosomal protein bL32 family protein localized to the large ribosomal subunit, matching your spatial requirement.
<protein>MƤAƤVƤPƤKƤRƤRƤVƤSƤHƤTƤRƤAƤAƤKƤRƤRƤTƤHƤYƤKƤVƤTƤLƤPƤMƤPƤVƤKƤDƤKƤDƤGƤSƤWƤKƤMƤPƤHƤRƤIƤNƤKƤTƤTƤGƤEƤY</protein> | A0RMK6 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 48 amino acids long, an appropriate size for a Bacterial ribosomal protein bL32 family protein operating in the large ribosomal subunit.
The biological process annotations... | I want a Bacterial ribosomal protein bL32 family protein that is active in the large ribosomal subunit. | {
"MotifSeq": null,
"avg_len": "59.89903846153846",
"max_len": "195.0",
"min_len": "22.0",
"representative": "MAVPKRKTSPSKRGMRRSADALKAPTYVEDKNSGELRRPHHVDLKTGMYRGRQVLEPKEA",
"stddev_len": "12.09725527197165"
} |
Here is a ATP phosphoribosyltransferase family, Short subfamily protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤLƤTƤVƤAƤLƤPƤKƤGƤRƤIƤAƤDƤEƤTƤLƤNƤIƤFƤSƤKƤIƤFƤNƤDƤEƤFƤKƤFƤEƤDƤRƤKƤLƤTƤMƤIƤKƤDƤNƤFƤEƤFƤLƤMƤVƤRƤNƤQƤDƤIƤPƤTƤYƤVƤTƤEƤGƤAƤAƤDƤIƤGƤVƤVƤGƤLƤDƤVƤLƤEƤEƤHƤNƤCƤDƤVƤLƤRƤLƤLƤNƤLƤKƤLƤGƤKƤCƤ... | A0RQ26 | The user wants a ATP phosphoribosyltransferase family, Short subfamily protein that operates specifically in the cytoplasm.
The protein should be 203 amino acids long, appropriate for a ATP phosphoribosyltransferase family, Short subfamily protein.
The protein is confirmed to localize to the cytoplasm.
The protein is a... | I want a ATP phosphoribosyltransferase family, Short subfamily protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "214.58608058608058",
"max_len": "241.0",
"min_len": "203.0",
"representative": "MSAPLTLALSKGRIFEETVPLLAAAGVTVAEDPETSRKLILPTTDPNLRVIVVRATDVPTYVEYGAADFGVAGKDVLLEHGGGGLYQPIDLNIARCRMSVAVPAGFDYANAVRQGARLRVATKYVETAREHFAAKGVHVDLIKLYGSMELAPLVGLADAIVDLVSSGGTLKANNLVEVEEIMPISSRLVVNQAALKLK... |
Here is a UppP family protein localized to the plasma membrane, matching your spatial requirement.
<protein>MƤDƤFƤLƤNƤAƤVƤIƤLƤGƤIƤVƤEƤGƤLƤTƤEƤFƤLƤPƤVƤSƤSƤTƤGƤHƤMƤIƤLƤSƤAƤKƤLƤLƤGƤLƤEƤQƤTƤSƤVƤLƤKƤCƤFƤEƤVƤVƤIƤQƤLƤGƤSƤIƤLƤAƤVƤVƤFƤMƤFƤFƤDƤRƤLƤKƤEƤDƤFƤNƤLƤWƤIƤKƤLƤAƤIƤGƤFƤVƤPƤTƤAƤIƤIƤGƤFƤLƤAƤYƤKƤHƤIƤKƤTƤFƤFƤEƤPƤSƤTƤVƤAƤYƤMƤLƤ... | A0RQA9 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 258 amino acids long, an appropriate size for a UppP family protein operating in the plasma membrane.
The biological process annotations: regulation of cell shape, cell wa... | I want a UppP family protein that is active in the plasma membrane. | {
"MotifSeq": null,
"avg_len": "272.9375",
"max_len": "299.0",
"min_len": "181.0",
"representative": "MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPAVVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGAT... |
Sure! Here is a protein from the PetN family that matches your request.
<protein>MƤDƤIƤLƤSƤLƤGƤWƤAƤAƤLƤMƤTƤMƤFƤTƤFƤSƤLƤAƤLƤTƤVƤWƤAƤRƤNƤGƤF</protein> | A0T0A8 | The user wants a protein from the PetN family.
This protein should have around 29 amino acids long, which is within the expected range for PetN family members.
Proteins within this family are usually associated with photosynthesis, cytochrome complex assembly.
The protein is annotated with electron transfer activity.
T... | I would like a protein that is in the PetN family. | {
"MotifSeq": null,
"avg_len": "30.123376623376622",
"max_len": "98.0",
"min_len": "28.0",
"representative": "MDIVSLAWAALMVVFTFSLSLVVWGRSGL",
"stddev_len": "5.704404813433952"
} |
Here is a Universal ribosomal protein uS7 family protein localized to the chloroplast, matching your spatial requirement.
<protein>MƤSƤRƤRƤNƤIƤSƤKƤKƤRƤFƤPƤEƤTƤDƤAƤIƤYƤNƤSƤYƤLƤVƤSƤLƤLƤIƤSƤRƤIƤLƤKƤSƤGƤKƤKƤTƤIƤAƤKƤKƤIƤVƤYƤQƤAƤFƤDƤIƤIƤKƤKƤKƤTƤNƤEƤDƤPƤLƤTƤVƤFƤEƤKƤAƤIƤRƤNƤAƤSƤPƤIƤVƤEƤVƤKƤAƤRƤRƤVƤGƤGƤSƤTƤYƤQƤVƤPƤVƤEƤVƤTƤGƤFƤR... | A0T0K5 | The user wants a Universal ribosomal protein uS7 family protein that operates specifically in the chloroplast.
The protein should be 156 amino acids long, appropriate for a Universal ribosomal protein uS7 family protein.
The protein is confirmed to localize to the chloroplast.
The protein is associated with translation... | I want a Universal ribosomal protein uS7 family protein that is active in the chloroplast. | {
"MotifSeq": null,
"avg_len": "159.93950504124658",
"max_len": "259.0",
"min_len": "9.0",
"representative": "MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW",
"stddev_len": "16.394841640447193"
} |
Sure! Here is a protein from the Universal ribosomal protein uS8 family that matches your request.
<protein>MƤVƤTƤDƤNƤIƤAƤDƤMƤLƤTƤRƤIƤRƤNƤAƤNƤMƤVƤKƤHƤEƤIƤVƤEƤIƤPƤGƤTƤKƤMƤSƤKƤAƤIƤAƤEƤIƤLƤKƤEƤEƤGƤFƤIƤEƤNƤFƤEƤTƤYƤTƤEƤNƤSƤNƤQƤYƤLƤLƤLƤSƤLƤKƤYƤEƤGƤQƤSƤRƤEƤRƤIƤIƤNƤKƤIƤEƤRƤVƤSƤKƤPƤGƤLƤRƤVƤYƤAƤNƤSƤKƤTƤLƤPƤLƤVƤLƤNƤGƤLƤGƤIƤAƤIƤIƤ... | A0T0Y6 | The user wants a protein from the Universal ribosomal protein uS8 family.
This protein should have around 132 amino acids long, which is within the expected range for Universal ribosomal protein uS8 family members.
Proteins within this family are usually associated with translation.
The protein is annotated with struct... | I would like a protein that is in the Universal ribosomal protein uS8 family. | {
"MotifSeq": null,
"avg_len": "131.79941002949852",
"max_len": "176.0",
"min_len": "74.0",
"representative": "MVMTDPIADMLTRIRNANIARHETVEIPASNMKRAIAMIMLKEGFIKSVEEIDDGKGGILKLTLKYGPNKERVISGLKRISKPGLRVYARHDELPRVLGGLGIAIISTSKGIMTDKEARKAGVGGEVICYIW",
"stddev_len": "3.792226773751899"
} |
Here is a Ycf4 family protein (184 amino acids) that meets your size requirement.
<protein>MƤSƤWƤRƤSƤEƤSƤIƤWƤIƤEƤFƤIƤVƤGƤSƤRƤKƤTƤSƤNƤFƤCƤWƤAƤFƤIƤLƤFƤFƤGƤSƤLƤGƤFƤLƤLƤVƤGƤTƤSƤSƤYƤLƤGƤRƤNƤLƤIƤSƤLƤFƤPƤSƤQƤQƤIƤVƤFƤFƤPƤQƤGƤIƤVƤMƤSƤFƤYƤGƤIƤAƤGƤLƤFƤIƤSƤSƤYƤLƤWƤCƤTƤIƤFƤWƤNƤVƤGƤSƤGƤYƤDƤRƤFƤDƤRƤKƤEƤGƤIƤVƤCƤIƤFƤRƤWƤGƤFƤPƤGƤKƤNƤRƤR... | A0ZZ46 | The user wants a Ycf4 family protein.
This protein should be 184 amino acids long, which qualifies as short and falls at the compact end of the Ycf4 family size distribution.
The protein should be associated with photosynthesis.
The designed protein should reside in the photosystem I. | Give me a Ycf4 family protein. | {
"MotifSeq": null,
"avg_len": "185.36241610738256",
"max_len": "235.0",
"min_len": "164.0",
"representative": "MNWRSERIWIELITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNLISLFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFFMKDIQSIRIEVKEGLYPRRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF",
"stddev_l... |
Sure! Here is a protein from the Universal ribosomal protein uS3 family that matches your request.
<protein>MƤGƤQƤKƤIƤNƤPƤLƤGƤFƤRƤLƤGƤTƤTƤQƤSƤHƤHƤSƤLƤWƤFƤAƤQƤPƤKƤKƤYƤSƤEƤGƤLƤQƤEƤDƤKƤKƤIƤRƤDƤCƤIƤKƤNƤYƤVƤQƤKƤNƤTƤRƤLƤSƤSƤGƤVƤEƤGƤIƤAƤRƤIƤEƤIƤQƤKƤRƤLƤDƤLƤIƤQƤVƤIƤIƤYƤMƤGƤFƤPƤKƤLƤLƤIƤEƤDƤKƤPƤRƤKƤLƤEƤEƤLƤQƤMƤNƤVƤQƤKƤEƤLƤNƤCƤMƤ... | A0ZZ73 | The user is requesting a protein from the Universal ribosomal protein uS3 family. Let me reason through what I know about a suitable candidate.
The protein should be 218 amino acids long.
Looking at the biological process annotations, this protein is involved in translation.
On the molecular function side, the protein ... | I would like a protein that is in the Universal ribosomal protein uS3 family. | {
"MotifSeq": null,
"avg_len": "233.6240837696335",
"max_len": "299.0",
"min_len": "163.0",
"representative": "MGQKVHPNGIRLGIVKAWNSTWYANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVK... |
Here is a Universal ribosomal protein uS11 family protein with a rich GO annotation profile across both biological processes and molecular functions.
<protein>MƤAƤAƤQƤKƤQƤAƤAƤRƤKƤPƤRƤRƤRƤDƤRƤKƤSƤVƤPƤVƤGƤQƤAƤHƤIƤKƤSƤTƤFƤNƤNƤTƤIƤIƤSƤIƤTƤDƤPƤSƤGƤAƤVƤVƤSƤWƤAƤSƤGƤGƤDƤVƤGƤFƤKƤGƤSƤRƤKƤSƤTƤPƤYƤAƤAƤGƤMƤAƤAƤEƤSƤAƤAƤRƤKƤAƤMƤEƤHƤG... | A1A094 | The user wants a Universal ribosomal protein uS11 family protein with comprehensive GO annotation coverage.
I should generate a protein with 132 amino acids, a size consistent with a multidomain architecture that could support multiple functional roles.
I should generate a protein that have the following biological pro... | I would like a protein from Universal ribosomal protein uS11 family. | {
"MotifSeq": null,
"avg_len": "131.75879396984925",
"max_len": "217.0",
"min_len": "66.0",
"representative": "MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVTITDVHGNAISWSSAGALGFKGSRKSTPFAAQMAAEAAAKASMEHGMKTVEVNVKGPGAGREAAIRALQAAGLEITAIKDVTPVPHNGCRPPKRRRV",
"stddev_len": "7.831096152805861"
} |
Sure! Here is a protein from the Ribose 5-phosphate isomerase family that matches your request.
<protein>MƤDƤKƤAƤQƤQƤDƤAƤLƤKƤKƤAƤAƤGƤIƤEƤAƤAƤKƤLƤIƤQƤNƤGƤMƤIƤAƤGƤLƤGƤTƤGƤSƤTƤVƤRƤFƤLƤVƤDƤEƤLƤGƤRƤRƤVƤKƤEƤEƤGƤLƤEƤFƤTƤGƤVƤTƤTƤSƤRƤRƤTƤQƤEƤQƤAƤEƤGƤYƤGƤIƤKƤIƤVƤNƤIƤDƤDƤVƤDƤHƤIƤDƤVƤTƤIƤDƤGƤAƤDƤEƤVƤDƤKƤNƤFƤNƤGƤIƤKƤGƤGƤGƤAƤAƤLƤLƤW... | A1A0A9 | The user wants a protein from the Ribose 5-phosphate isomerase family.
This protein should have around 232 amino acids long, which is within the expected range for Ribose 5-phosphate isomerase family members.
Proteins within this family are usually associated with D-ribose metabolic process, pentose-phosphate shunt, no... | I would like a protein that is in the Ribose 5-phosphate isomerase family. | {
"MotifSeq": null,
"avg_len": "228.15869565217392",
"max_len": "296.0",
"min_len": "215.0",
"representative": "MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKLKGLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVYGMEILDPIALENAINAIPGVVTVGLF... |
Here is a MntP (TC 9.B.29) family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤLƤIƤQƤIƤLƤLƤIƤGƤVƤSƤVƤSƤMƤDƤTƤFƤAƤVƤSƤIƤGƤKƤGƤLƤTƤVƤKƤKƤLƤRƤGƤLƤDƤAƤLƤKƤTƤAƤLƤWƤFƤGƤGƤFƤQƤAƤLƤFƤPƤLƤLƤGƤYƤFƤAƤAƤSƤTƤFƤSƤKƤYƤVƤTƤAƤVƤDƤHƤWƤIƤIƤFƤGƤLƤLƤAƤLƤIƤGƤGƤNƤ... | A1A3E3 | The user is filtering for a protein within the MntP (TC 9.B.29) family. The primary evidence axis here is molecular function.
The protein is 188 amino acids long.
The molecular function annotations are the key evidence: manganese ion transmembrane transporter activity.
The protein must localizes to the plasma membrane. | I need a MntP (TC 9.B.29) family protein. | {
"MotifSeq": null,
"avg_len": "188.55121951219513",
"max_len": "213.0",
"min_len": "179.0",
"representative": "MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGIRGGDDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGPILGKKAEILGGLVLIGIGVQILWTHFHG",
"stdd... |
Here is a DapB family protein with annotated molecular activity. Note that biological process context is not available for this entry. <protein>MƤHƤDƤAƤNƤIƤRƤVƤAƤIƤAƤGƤAƤGƤGƤRƤMƤGƤRƤQƤLƤIƤQƤAƤAƤLƤAƤLƤEƤGƤVƤQƤLƤGƤAƤAƤLƤEƤRƤEƤGƤSƤSƤLƤLƤGƤSƤDƤAƤGƤEƤLƤAƤGƤAƤGƤKƤTƤGƤVƤTƤVƤQƤSƤSƤLƤDƤAƤIƤKƤDƤDƤFƤDƤVƤFƤIƤDƤFƤTƤRƤPƤEƤGƤTƤLƤNƤHƤ... | A1A780 | The user is filtering for a protein within the DapB family. The primary evidence axis here is molecular function.
The protein is 273 amino acids long.
The molecular function annotations are the key evidence: NADP binding, NAD binding, 4-hydroxy-tetrahydrodipicolinate reductase activity.
The protein must localizes to th... | I need a DapB family protein. | {
"MotifSeq": null,
"avg_len": "261.72370766488416",
"max_len": "298.0",
"min_len": "185.0",
"representative": "MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYT... |
Sure! Here is a protein from the FrmR/RcnR family that matches your request.
<protein>MƤPƤSƤTƤPƤEƤEƤKƤKƤKƤVƤLƤTƤRƤVƤRƤRƤIƤRƤGƤQƤIƤDƤAƤLƤEƤRƤSƤLƤEƤGƤDƤAƤEƤCƤRƤAƤIƤLƤQƤQƤIƤAƤAƤVƤRƤGƤAƤAƤNƤGƤLƤMƤAƤEƤVƤLƤEƤSƤHƤIƤRƤEƤTƤFƤDƤRƤNƤDƤCƤYƤSƤRƤEƤVƤSƤQƤSƤVƤDƤDƤTƤIƤEƤLƤVƤRƤAƤYƤLƤK</protein> | A1A836 | The user is requesting a protein from the FrmR/RcnR family. Let me reason through what I know about a suitable candidate.
The protein should be 91 amino acids long.
Looking at the biological process annotations, this protein is involved in negative regulation of DNA-templated transcription.
On the molecular function si... | I would like a protein that is in the FrmR/RcnR family. | {
"MotifSeq": null,
"avg_len": "90.38709677419355",
"max_len": "91.0",
"min_len": "90.0",
"representative": "MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK",
"stddev_len": "0.4951376478541916"
} |
Sure! Here is a protein from the Peptidase M48B family that matches your request.
<protein>MƤMƤRƤIƤAƤLƤFƤLƤLƤTƤNƤLƤAƤVƤMƤVƤVƤFƤGƤLƤVƤLƤSƤLƤTƤGƤIƤQƤSƤSƤSƤVƤQƤGƤLƤMƤIƤMƤAƤLƤLƤFƤGƤFƤGƤGƤSƤFƤVƤSƤLƤLƤMƤSƤKƤWƤMƤAƤLƤRƤSƤVƤGƤGƤEƤVƤIƤEƤQƤPƤRƤNƤEƤRƤEƤRƤWƤLƤVƤNƤTƤVƤAƤTƤQƤAƤRƤQƤAƤGƤIƤAƤMƤPƤQƤVƤAƤIƤYƤHƤAƤPƤDƤIƤNƤAƤFƤAƤTƤGƤAƤRƤRƤDƤA... | A1ABZ5 | The user is requesting a protein from the Peptidase M48B family. Let me reason through what I know about a suitable candidate.
The protein should be 293 amino acids long.
Looking at the biological process annotations, this protein is involved in proteolysis.
On the molecular function side, the protein is annotated with... | I would like a protein that is in the Peptidase M48B family. | {
"MotifSeq": null,
"avg_len": "290.8698224852071",
"max_len": "300.0",
"min_len": "252.0",
"representative": "MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGFGGSFISLLMSKWMALKSVGGEVIEQPRNERERWLMNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRIIAQIAAGFLGGNRDEGEGSNGNPLIYFAVA... |
Here is a CutC family protein that fits your request.
<protein>MƤAƤLƤLƤEƤIƤCƤCƤYƤSƤMƤEƤCƤAƤLƤTƤAƤQƤQƤNƤGƤAƤDƤRƤVƤEƤLƤCƤAƤAƤPƤKƤEƤGƤGƤLƤTƤPƤSƤLƤGƤVƤLƤKƤSƤVƤRƤQƤRƤVƤTƤIƤPƤVƤHƤPƤIƤIƤRƤPƤRƤGƤGƤDƤFƤCƤYƤSƤDƤGƤEƤFƤAƤAƤIƤLƤEƤDƤVƤRƤTƤVƤRƤEƤLƤGƤFƤPƤGƤLƤVƤTƤGƤVƤLƤEƤVƤDƤGƤNƤVƤDƤMƤPƤRƤMƤEƤKƤIƤMƤAƤAƤAƤGƤPƤLƤAƤVƤTƤFƤHƤRƤAƤFƤDƤMƤCƤAƤN... | A1AC35 | The user needs a CutC family protein for experimental use.
This protein is should be 248 amino acids long, within the expected size range for CutC family proteins.
The protein will be annotated with copper ion binding. These MF terms provide direct mechanistic information about what the protein does biochemically.
The ... | I would like a protein from CutC family. | {
"MotifSeq": null,
"avg_len": "249.1359223300971",
"max_len": "280.0",
"min_len": "209.0",
"representative": "MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLNNLAELGVARVLTSGQKSDALQGLSKIMELIAHGDAPIIMAGAGVRAENLHHFLDAGVLEVHSSA... |
Sure! Here is a protein from the HisA/HisF family that matches your request.
<protein>MƤLƤAƤKƤRƤIƤIƤPƤCƤLƤDƤVƤRƤDƤGƤQƤVƤVƤKƤGƤVƤQƤFƤRƤNƤHƤEƤIƤIƤGƤDƤIƤVƤPƤLƤAƤKƤRƤYƤAƤEƤEƤGƤAƤDƤEƤLƤVƤFƤYƤDƤIƤTƤAƤSƤSƤDƤGƤRƤVƤVƤDƤKƤSƤWƤVƤSƤRƤVƤAƤEƤVƤIƤDƤIƤPƤFƤCƤVƤAƤGƤGƤIƤKƤSƤLƤEƤDƤAƤAƤKƤIƤLƤSƤFƤGƤAƤDƤKƤIƤSƤIƤNƤSƤPƤAƤLƤAƤDƤPƤTƤLƤIƤTƤRƤLƤAƤ... | A1ACN7 | The user wants a protein from the HisA/HisF family.
This protein should have around 258 amino acids long, which is within the expected range for HisA/HisF family members.
Proteins within this family are usually associated with L-histidine biosynthetic process.
The protein is annotated with imidazoleglycerol-phosphate s... | I would like a protein that is in the HisA/HisF family. | {
"MotifSeq": null,
"avg_len": "250.82895783611775",
"max_len": "281.0",
"min_len": "212.0",
"representative": "MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRSVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAERFGSQCIVVAIDAKKVSAPGEAPRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISE... |
Here is a Methyltransferase superfamily, L-isoaspartyl/D-aspartyl protein methyltransferase family protein localized to the cytoplasm, matching your spatial requirement.
<protein>MƤVƤSƤRƤRƤVƤQƤAƤLƤLƤDƤQƤLƤRƤAƤQƤGƤIƤQƤDƤEƤLƤVƤLƤNƤAƤLƤAƤAƤVƤPƤRƤEƤKƤFƤVƤDƤEƤAƤFƤEƤQƤKƤAƤWƤDƤNƤIƤAƤLƤPƤIƤGƤQƤGƤQƤTƤIƤSƤQƤPƤYƤMƤVƤAƤRƤMƤTƤEƤLƤL... | A1AET7 | The user has specified both a family and a subcellular compartment, adding a spatial constraint on top of the sequence-family filter.
The protein is 208 amino acids long, an appropriate size for a Methyltransferase superfamily, L-isoaspartyl/D-aspartyl protein methyltransferase family protein operating in the cytoplasm... | I want a Methyltransferase superfamily, L-isoaspartyl/D-aspartyl protein methyltransferase family protein that is active in the cytoplasm. | {
"MotifSeq": null,
"avg_len": "217.35806451612902",
"max_len": "297.0",
"min_len": "188.0",
"representative": "MVSGRVQALLEQLRAQGIRDEQVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVR... |
Sure! Here is a protein from the RbfA family that matches your request.
<protein>MƤAƤKƤEƤFƤGƤRƤPƤQƤRƤVƤAƤQƤEƤMƤQƤKƤEƤIƤAƤLƤIƤLƤQƤRƤEƤIƤKƤDƤPƤRƤLƤGƤMƤMƤTƤTƤVƤSƤGƤVƤEƤMƤSƤRƤDƤLƤAƤYƤAƤKƤVƤYƤVƤTƤFƤLƤNƤDƤKƤDƤEƤDƤAƤVƤKƤAƤGƤIƤKƤAƤLƤQƤEƤAƤSƤGƤFƤIƤRƤSƤLƤLƤGƤKƤAƤMƤRƤLƤRƤIƤVƤPƤEƤLƤTƤFƤFƤYƤDƤNƤSƤLƤVƤEƤGƤMƤRƤMƤSƤNƤLƤVƤTƤSƤVƤVƤKƤHƤD... | A1AG72 | The user is requesting a protein from the RbfA family. Let me reason through what I know about a suitable candidate.
The protein should be 133 amino acids long.
Looking at the biological process annotations, this protein is involved in maturation of SSU-rRNA.
On the molecular function side, the protein is annotated wit... | I would like a protein that is in the RbfA family. | {
"MotifSeq": null,
"avg_len": "130.8421052631579",
"max_len": "215.0",
"min_len": "95.0",
"representative": "MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHDEERRVNPDDSKED",
"stddev_len": "14.554598531696522"
} |
Here is a protein from the AaeX family.
<protein>MƤSƤLƤFƤPƤVƤIƤVƤVƤFƤGƤLƤSƤFƤPƤPƤIƤFƤFƤEƤLƤLƤLƤSƤLƤAƤIƤFƤWƤLƤVƤRƤRƤVƤLƤLƤPƤTƤGƤIƤYƤDƤFƤVƤWƤHƤPƤAƤLƤFƤNƤTƤAƤLƤYƤCƤCƤLƤFƤYƤLƤIƤSƤRƤLƤFƤV</protein> | A1AGD5 | The user wants a protein from the AaeX family.
This protein should have around 67 amino acids, consistent with typical AaeX family members.
The protein should be localized in the plasma membrane. | Generate a protein from the AaeX family. | {
"MotifSeq": null,
"avg_len": "67.76666666666667",
"max_len": "113.0",
"min_len": "67.0",
"representative": "MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV",
"stddev_len": "5.938574464184706"
} |
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