Coverage by region vs. Global dist
Hi there. I am trying to retain the coverage for genes of interest found in my assembled contigs, and have a region BED file, a thresholds BED file, a global.dist.txt file, and a summary.txt file. 

I noticed that for certain genes with multiple gene predictions in the BED file (from Prodigal), the number of entries in the global.dist.txt file describing the distribution of their coverage is less than the number of entries of this predicted gene in the regions & threshold files. For example, a gene with multiple predictions appears 102 times in my BED files, but only 49 times in the global.dist file...

Is there a reason for this? Just trying to understand the output of these files better. Thanks!