Recieving low distribution values from exome data
Hi @brentp ,

For 14 exome samples with approx 3.3GB exome BAM each, I am receiving low distribution values of depths from mosdepth tool compared to other tools such as Qualimap. [On average: 26% low value from the other tool]
I have used the parameter mentioned in your example: mosdepth --by capture.bed sample-output sample.exome.bam
For both the tool, capture.bed = 12MB

Can you guide me on why there's much difference in output?

Thanks,
Olivia