SPc l r run python script get "- is not executable, make sure - is in your PATH"
### Expected behavior.

I don't know. I have ask ```deepseek v3```, and check all the steps. Such as pyenv python is in $PATH。
I am using WSL, Ubuntu Server 24.04. My init.toml is as follows:
```
#=============================================================================
# basic.toml --- basic configuration example for SpaceVim
# Copyright (c) 2016-2023 Wang Shidong & Contributors
# Author: Wang Shidong < wsdjeg@outlook.com >
# URL: https://spacevim.org
# License: GPLv3
#=============================================================================

# All SpaceVim option below [option] section
[options]
    # set spacevim theme. by default colorscheme layer is not loaded,
    # if you want to use more colorscheme, please load the colorscheme
    # layer
    colorscheme = "gruvbox"
    colorscheme_bg = "dark"
    # Disable guicolors in basic mode, many terminal do not support 24bit
    # true colors
    enable_guicolors = false
    # Disable statusline separator, if you want to use other value, please
    # install nerd fonts
    statusline_separator = "nil"
    statusline_iseparator = "bar"
    buffer_index_type = 4
    windows_index_type = 3
    enable_tabline_filetype_icon = false
    enable_statusline_mode = false
    statusline_unicode = false
    # Enable vim compatible mode, avoid changing origin vim key bindings
    vimcompatible = true

# Enable autocomplete layer
[[layers]]
name = 'autocomplete'
auto_completion_return_key_behavior = "complete"
auto_completion_tab_key_behavior = "cycle"

[[layers]]
name = 'shell'
default_position = 'top'
default_height = 30


[[layers]]
name = "lang#python"
format_on_save = true
formatter = "autopep8"
linter = "flake8"
test_framework="pytest"
python_interpreter = "/home/hengaini2077/.pyenv/versions/3.12.8/bin/python"

[[layers]]
name = "lsp"
filetypes = ["python"]
[layers.override_cmd]
  python = ["pyls"] 
```
Python is as follows:
```
hengaini2077@hengaini2098:~$ pyenv global
3.12.8
hengaini2077@hengaini2098:~$ pyenv shims
/home/hengaini2077/.pyenv/shims/2to3
/home/hengaini2077/.pyenv/shims/2to3-3.11
/home/hengaini2077/.pyenv/shims/2to3-3.12
/home/hengaini2077/.pyenv/shims/Activate.ps1
/home/hengaini2077/.pyenv/shims/activate
/home/hengaini2077/.pyenv/shims/activate.csh
/home/hengaini2077/.pyenv/shims/activate.fish
/home/hengaini2077/.pyenv/shims/autopep8
/home/hengaini2077/.pyenv/shims/bokeh
/home/hengaini2077/.pyenv/shims/f2py
/home/hengaini2077/.pyenv/shims/flake8
/home/hengaini2077/.pyenv/shims/get_gprof
/home/hengaini2077/.pyenv/shims/get_objgraph
/home/hengaini2077/.pyenv/shims/idle
/home/hengaini2077/.pyenv/shims/idle3
/home/hengaini2077/.pyenv/shims/idle3.11
/home/hengaini2077/.pyenv/shims/idle3.12
/home/hengaini2077/.pyenv/shims/isort
/home/hengaini2077/.pyenv/shims/isort-identify-imports
/home/hengaini2077/.pyenv/shims/markdown-it
/home/hengaini2077/.pyenv/shims/markdown_py
/home/hengaini2077/.pyenv/shims/normalizer
/home/hengaini2077/.pyenv/shims/numpy-config
/home/hengaini2077/.pyenv/shims/panel
/home/hengaini2077/.pyenv/shims/pip
/home/hengaini2077/.pyenv/shims/pip3
/home/hengaini2077/.pyenv/shims/pip3.11
/home/hengaini2077/.pyenv/shims/pip3.12
/home/hengaini2077/.pyenv/shims/py.test
/home/hengaini2077/.pyenv/shims/pycodestyle
/home/hengaini2077/.pyenv/shims/pydoc
/home/hengaini2077/.pyenv/shims/pydoc3
/home/hengaini2077/.pyenv/shims/pydoc3.11
/home/hengaini2077/.pyenv/shims/pydoc3.12
/home/hengaini2077/.pyenv/shims/pyflakes
/home/hengaini2077/.pyenv/shims/pylint
/home/hengaini2077/.pyenv/shims/pylint-config
/home/hengaini2077/.pyenv/shims/pyls
/home/hengaini2077/.pyenv/shims/pyreverse
/home/hengaini2077/.pyenv/shims/pytest
/home/hengaini2077/.pyenv/shims/python
/home/hengaini2077/.pyenv/shims/python-config
/home/hengaini2077/.pyenv/shims/python3
/home/hengaini2077/.pyenv/shims/python3-config
/home/hengaini2077/.pyenv/shims/python3.11
/home/hengaini2077/.pyenv/shims/python3.11-config
/home/hengaini2077/.pyenv/shims/python3.11-gdb.py
/home/hengaini2077/.pyenv/shims/python3.12
/home/hengaini2077/.pyenv/shims/python3.12-config
/home/hengaini2077/.pyenv/shims/python3.12-gdb.py
/home/hengaini2077/.pyenv/shims/symilar
/home/hengaini2077/.pyenv/shims/tqdm
/home/hengaini2077/.pyenv/shims/undill
hengaini2077@hengaini2098:~$ echo $PATH
/home/hengaini2077/.pyenv/shims:/home/hengaini2077/.pyenv/bin:/home/hengaini2077/nvim-linux64/bin:/home/hengaini2077/.pyenv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/lib/wsl/lib:/mnt/c/Python312/Scripts/:/mnt/c/Python312/:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/Program Files (x86)/Common Files/Oracle/Java/javapath:/mnt/c/Windows/system32:/mnt/c/Windows:/mnt/c/Windows/System32/Wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0/:/mnt/c/Windows/System32/OpenSSH/:/mnt/c/Program Files/dotnet/:/mnt/d/Program Files (x86)/Microsoft SQL Server/150/Tools/Binn/:/mnt/d/Program Files/Microsoft SQL Server/150/Tools/Binn/:/mnt/d/Program Files (x86)/Microsoft SQL Server/150/DTS/Binn/:/mnt/d/Program Files/Microsoft SQL Server/150/DTS/Binn/:/mnt/d/Program Files/Microsoft SQL Server/Client SDK/ODBC/170/Tools/Binn/:/mnt/d/Program Files (x86)/Microsoft SQL Server/160/DTS/Binn/:/mnt/c/Program Files (x86)/Microsoft SQL Server/100/Tools/Binn/:/mnt/c/Program Files/Microsoft SQL Server/100/Tools/Binn/:/mnt/c/Program Files/Microsoft SQL Server/100/DTS/Binn/:/mnt/c/Program Files (x86)/Microsoft SQL Server/100/Tools/Binn/VSShell/Common7/IDE/:/mnt/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/PrivateAssemblies/:/mnt/c/Program Files (x86)/Microsoft SQL Server/100/DTS/Binn/:/mnt/c/:/mnt/c/tools/TinyTeX/bin/windows:/mnt/c/Users/henga/.rye/shims:/mnt/c/Users/henga/scoop/shims:/mnt/c/Program Files/Azure Data Studio/bin:/mnt/e/HengainiLearning/Spark/spark-3.4.1-bin-hadoop3/bin:/mnt/e/HengainiLearning/Spark/hadoop/bin:/mnt/c/Program Files/Java/jdk-1.8/bin:/mnt/c/Python312:/mnt/c/Users/henga/AppData/Roaming/Python/Python310/Scripts:/mnt/d/Program Files/Python/Python311/Scripts:/mnt/c/Users/henga/AppData/Roaming/nvm:/mnt/c/Program Files/nodejs:/mnt/c/Users/henga/AppData/Roaming/nvm:/mnt/d/Program Files/MiKTeX/miktex/bin/x64/:/mnt/c/Users/henga/AppData/Local/Microsoft/WinGet/Packages/DuckDB.cli_Microsoft.Winget.Source_8wekyb3d8bbwe:/mnt/e/temp/Graphviz-12.0.0-win64/bin:/mnt/d/Program Files/Python/Python311:/mnt/d/Program Files/Python/Python311/Scripts:/mnt/c/ffmpeg/bin:/mnt/c/Users/henga/AppData/Local/Programs/MiKTeX/miktex/bin/x64/:/mnt/d/Program Files/MiKTeX/miktex/bin/x64/:/mnt/c/Users/henga/AppData/Local/Microsoft/WindowsApps:/mnt/d/nvim-win64/bin:/mnt/c/Program Files/Git/bin:/snap/bin
```
OS: wsl Ubuntu Server 24.04
Neovim: NVIM v0.10.3
Python: 3.12.8
SpaceVim: 2.5.0-dev

What's the problem? Thank you!



### The reproduce ways from Vim starting.

A bug happened!

### Output of the `:SPDebugInfo!`

_No response_